Tessaracoccus lacteus: QH948_11165
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Entry
QH948_11165 CDS
T10309
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tls Tessaracoccus lacteus
Pathway
tls03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tls00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QH948_11165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tls03400
]
QH948_11165 (mfd)
Enzymes [BR:
tls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QH948_11165 (mfd)
DNA repair and recombination proteins [BR:
tls03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QH948_11165 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
WGT46691
UniProt:
A0ABY8PWC4
LinkDB
All DBs
Position
complement(2383548..2387051)
Genome browser
AA seq
1167 aa
AA seq
DB search
MKYPGLLGELEADRGFAATIADSRRSGVTALDVTAVTSFFPLLSSAIAEGSGGTVLIVTS
TYREAEQLTAEVGALLGPDQVEYYPAWETLPHERLSPRADTVGRRLAVLRRLAGFDGDIP
RVVIAPVRSVLQPQVRGLADMTPVQIGVGDSYELSRLLNDLVGAAYNRVDLVERRGEFAV
RGGIVDIFPPTAEHPVRIEFFGDEVDEIRYFTVADQRSTGESAKSIVAPPCRELLLTEAV
RDRARRLSAQHPELSDLLDRVAEGHAQEGMEALIPALVDGLELLVDVLPKGSIVLASQPE
LIRARAAELVATSQEFLEASWAAAAGGGTSPIDLGASAYWTLADVRMHALEIGLRWWSMS
PFAADDQGAYPSTGSGLDADSVYSRTLAVHPSEPFHGDVAVATQHVARRVKDGWRVIVAV
EGRGLAQRLIELLDEAGVRAAIGDLEGPPAPGSVTVVLATLRQGWRADEARIEVLTSAEL
TGQAAVDKVERKLPSRRKATIQPLELKAGDPVVHESHGVGRFVELVSRTIQGATRDYLVI
EYAPSKRGQPGDRLFVPMDQLDQLSRYVGSESPTLDKMGGADWTKRKAKARKAVREISGE
LIKLYAARQATKGHAFGPDTAWQRELEDAFSYVETPDQLSAITEVKADMEKLVPMDRLIC
GDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVTQHYATFASRFAGFPVRVAQLSRFQ
SDAEARKVVDGIANGKVDVVIGTHRLLSKEMQFKDLGLVIIDEEQRFGVEHKERLKAMRV
NVDVLSMSATPIPRTLEIAITGIREMSVIATPPEERHPVLTFAGPYDDAQVKAALRRELA
REGQAFFVHNRVGTIEKTAARLRELVPEARIATAHGQMSEARLEQVMQDFWERNTDVLVC
TTIVEAGLNIQSANTLIIDRADMMGLSQLHQLRGRVGRSRERGYAYFLYPADKPLSEASH
ERLATMAANTDLGAGMAIAMRDLELRGAGNLLGEDQSGHIEGVGFDMYLRMVGEAVANYR
GDAGEPEPTMRVEIPVDAHLPEDYITSERLRLEMYKQIAEIRTEADIEGVLAELVDRYGE
PPQAVVSLLGVARLRNLAREHGIQEIVPQGKVVRLAPLSLPESRQLRLKRLYPGSTVKSA
VDQILVPKPADGDYLGWATTLITQLFA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
gtgaagtacccgggactgctcggagaactcgaggccgaccgcggcttcgcggcgacgatc
gccgactccaggcgcagcggcgtcaccgcgctcgacgtgaccgccgtcacctccttcttc
cccctgctcagctccgccatcgccgagggttccggcggcaccgtcctgatcgtcacctcc
acctaccgcgaggcagaacagctcaccgccgaggtcggcgccctgctcggccccgaccag
gtcgagtactaccccgcctgggagaccctgccccacgagcgcctctccccgcgcgccgac
accgtcggccgacgactcgcggtgctccgcaggctcgccggattcgacggtgacatcccc
cgggtcgtgatcgcgcccgtccgctcggtgctgcagccccaggtccgcggcctcgccgac
atgacccccgtccagatcggggtgggggacagctacgagctctcccgcctgctgaacgac
ctcgtcggcgccgcctacaaccgcgtcgacctcgtcgagcggcgcggcgagttcgccgtc
cgcggcggcatcgtcgacatcttcccgccgaccgccgaacacccggtgcgcatcgagttc
ttcggcgacgaggtcgacgagatccgctacttcaccgtcgccgaccagcgctcgacgggg
gagtccgcgaagagcatcgtcgccccgccgtgccgcgagctgctgctcaccgaagccgtc
cgcgaccgcgcccgccggctctccgcacagcaccccgagctcagcgacctgctcgaccgc
gtcgccgaggggcacgcgcaggagggtatggaggccctgatccccgcgctggtcgacggc
ctcgagctgctcgtcgacgtgctgcccaaggggtcgatcgtgctggcctcgcagccggag
ctgatccgcgcccgtgccgccgaactcgtcgccaccagccaggagttcctcgaggccagc
tgggccgcggccgccggcggcggcacctcacccatcgatctgggcgcctccgcctactgg
accctggcggacgtgcgcatgcatgcgctggaaatcgggctgcgctggtggtccatgtcg
cccttcgccgccgacgaccagggcgcctacccctcgacaggctcagggcttgacgccgac
tccgtctactcccgcaccctggccgtccacccctccgagcccttccacggcgacgtcgcc
gtcgcgacgcagcacgtggcccgcagggtcaaggacggctggcgggtcatcgtcgccgtc
gagggccgcggcctcgcgcagcgtctcatcgaactgctcgacgaggcgggcgtccgtgcc
gcgatcggcgacctcgaggggccgccggcccccggctccgtcacggtcgtcctggcgacg
ctgcggcagggctggcgcgccgacgaggcccgcatcgaggtcctcacctctgccgagctg
accggccaggcggccgtcgacaaggtcgaacgcaagctgcccagccgccgcaaggccacc
atccagccgctcgagctgaaggcgggcgaccccgtcgtgcacgagtcccacggcgtcggc
cggttcgtcgagctcgtcagccgcacgatccagggcgccacccgcgactacctcgtcatc
gagtacgcgcccagcaaacgcggccaacccggcgaccggctgttcgtcccgatggaccag
ctcgaccagctcagccgctacgtgggctcggagtccccgacgctcgacaagatgggcggc
gccgactggaccaagcgcaaggcgaaggcccgcaaggccgtccgggagatctccggtgag
ctcatcaagctctacgccgcccgccaggccaccaagggccacgcgttcggccccgacacc
gcgtggcagcgggaactcgaggacgcgttcagctacgtcgagaccccggaccagctctcc
gccatcaccgaggtgaaggccgacatggagaagctcgtcccaatggaccgcctcatctgc
ggcgacgtcggctacggcaagaccgagatcgccgtgcgcgccgcgttcaaggccgtgcag
gacggcaagcaggtcgccgtgctcgtgccgacgacgctgctcgtcacgcagcactacgcc
acgttcgcgtcccgcttcgccgggttccccgtgcgcgtcgcgcagttgtcgcgcttccag
agcgacgccgaggcccgcaaggtcgtcgacggcatcgccaacggcaaggtcgacgtcgtc
atcggcacccatcgcctgctcagcaaggagatgcagttcaaggacctcggcctggtcatc
atcgacgaggagcagcgcttcggcgtcgagcacaaggaacgcctgaaggccatgcgggtc
aacgtcgatgtcctgtcgatgtccgccacgccgatcccgcgcacgctcgagatcgccatc
acgggcatccgggagatgagcgtcatcgcgaccccgcccgaggagcgccaccccgtcctg
acgttcgccgggccctacgacgacgcacaggtcaaggccgccctgcgccgcgagctcgcc
cgcgagggccaggcgttcttcgtgcacaaccgcgtcggcacgatcgagaagaccgcggcc
cggctgcgagagctcgtccccgaggctcgtatcgcgacggcgcacgggcagatgagcgag
gcgcgcctcgagcaggtcatgcaggacttctgggagcgcaacactgacgtgctggtctgc
accaccatcgtcgaggcgggtctgaacatccagagcgccaacacgctgatcatcgaccgc
gccgatatgatgggcctgtcgcagctgcaccagctccgcggccgcgtcggcaggtcccgc
gagcgcggctacgcctacttcctgtacccggccgacaagccgctgtcggaggcctcccac
gagcgcctcgcgaccatggccgccaacaccgacctgggcgccggcatggccatcgccatg
cgcgacctggagctccgcggcgcaggcaacctcctgggcgaggaccagtccggccacatc
gagggcgtcggcttcgacatgtacctgcgcatggtcggcgaggccgtcgccaactaccgc
ggcgacgcgggcgaacccgagccgacgatgcgggtcgagatccccgtcgacgcgcacctg
ccggaggactacatcacctcggagcggctgcgcctcgagatgtacaagcagatcgccgag
atccgcaccgaggcagacatcgagggcgtgctggccgagctggtcgaccggtacggcgag
ccgccccaggccgtggtgtcgctcctgggcgtcgcccggctgcggaacctggcccgcgag
cacggcatccaggagatcgtcccgcagggcaaggtcgtgcgcctggcgccgctcagcctg
ccggagtcgcggcagctgcgcctgaagcgcctgtacccgggctcgaccgtgaagtccgcc
gtcgaccagatcctcgtcccgaagcccgccgacggcgactacctcgggtgggcgaccacg
ctcatcacgcagctgttcgcgtga
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