Thermococcus litoralis: OCC_05219
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Entry
OCC_05219 CDS
T02800
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
tlt
Thermococcus litoralis
Pathway
tlt03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tlt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OCC_05219 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tlt03021
]
OCC_05219 (tfb)
Transcription machinery [BR:
tlt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
OCC_05219 (tfb)
Prokaryotic type
Archaeal type
TFB
OCC_05219 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Sigma70_r4
Zn_ribbon_RRN7
Zn_Ribbon_Prim
A2L_zn_ribbon
BRF2-like_C_cyclin_rpt
Zn_ribbon_tTFIIB
FtrD-like
HTH_11
HTH_Tnp_ISL3
HTH_36
Lar_restr_allev
Zn_ribbon_LysW
FYDLN_acid
Trm112p
Zn_ribbon_IS1595
DUF7567
RB_B
Auto_anti-p27
Ribosomal_S27e
Motif
Other DBs
NCBI-ProteinID:
EHR78614
UniProt:
H3ZN62
LinkDB
All DBs
Position
complement(348388..349287)
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AA seq
299 aa
AA seq
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MTKHRVCPVCGSDKFVYDPERGEVICANCGFVIQENMIDMGPEWRAFDASQREKRSRTGA
PESILLHDKGLSTDIGYDRNVKGLMREKIYRLRKWQSRLRVSDAAERNLAFALSELDRLG
ARLNLPKHVEEEAARLYREAVRKGLIRGKSIESVIAACVYAACRLLKIPRTLDEIADIAK
VDKKEIGRSFRFIARNLNLTPKKLFVKPTDYVNKFADELGLSERTRRRAIELLEKAYGMG
LTSGKSPAGLVAAALYIAGLLEGEKRTQREVAEVARVTEVTVRNRYKEMVEKLGLKLPL
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
gtgactaagcatagggtttgcccagtttgcggttccgataagtttgtttatgaccccgaa
aggggagaagtaatctgtgcaaattgcggttttgtaattcaggaaaacatgattgatatg
ggtcccgagtggagggcatttgatgcttctcagagggagaagcgttctaggactggcgcg
cctgagagcattctgctgcacgataagggtctttcgacggatattggttatgacaggaat
gttaagggcttgatgagggagaaaatttatcgtctcaggaagtggcagagcaggctgaga
gttagcgatgccgccgagagaaaccttgcttttgccttgagtgagcttgacaggcttggt
gcgaggttaaaccttccaaagcacgttgaggaggaagcggcgaggctttacagagaggct
gttagaaaggggcttatcaggggaaagtcgattgagagcgttattgcggcttgtgtttac
gccgcctgcaggctcttgaagattccaaggactcttgatgagattgccgatattgccaag
gttgacaagaaagaaattggcaggagcttcaggttcattgcgaggaatttgaacttgact
cccaagaagctcttcgtgaagccgacggattatgtgaacaagtttgccgatgagcttggc
ctgagcgagaggacgaggagaagggcaatagagctccttgagaaagcttacgggatgggc
ttgacgagtggtaaaagccctgctggccttgttgctgcagccttgtacattgccggtctt
ctagagggtgagaagaggactcagagggaagttgccgaagttgcaagagtaacagaagtc
acagtaagaaacagatacaaagaaatggtagaaaaactagggctaaagctcccgctttga
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