Thermococcus litoralis: OCC_06519
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Entry
OCC_06519 CDS
T02800
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tlt
Thermococcus litoralis
Pathway
tlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCC_06519
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlt03019
]
OCC_06519
Messenger RNA biogenesis [BR:
tlt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OCC_06519
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
PDEase_II
NERD_plant
Motif
Other DBs
NCBI-ProteinID:
EHR79029
UniProt:
H3ZLY7
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All DBs
Position
95802..97124
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AA seq
440 aa
AA seq
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MIKVYTLGGYEEVGKNMTAVEYEGEVVIIDMGIRLDRVLIHEDVNFQQMSSRDLRKLGAI
PDDSSLKNKKVVAIALSHGHLDHIGAIAKLAPHYPNVPIYGTPYTIKLAKGEVRSEQYFE
VTNPMYETQYGEIVQVSENLAIEFVQITHSIPHSSMVVIHTPEGAVVYACDYKFDNHNPL
GEKPDYKRLKEIGQEGVKILIPESTRAAEETKTPSEASAKLLLEDFFYYEGMEEKGLITT
TFASHIARLQELIEIANNMGRQAVLVGRSLAKYTGIAKQLGLIKMKGAKAVRSPNAVQKT
LREVSQARENYLLIVTGHQGEPGAVLTRMANGELYDIGKDDTVVFSAGVIPNPLNIAQRY
ALETKLRMRGVRMVKDLHVSGHASREDHRYLIKLLNPENIIPAHGEFRMLTHYAELAEEE
GYLIGRDVFVSRNGYKVDVR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagtttacacgctaggtggttacgaggaagtaggaaaaaacatgactgccgtg
gaatatgaaggagaagttgtgattattgatatgggaatcaggcttgatagggttcttatc
catgaggatgttaactttcagcagatgagttcgagggatttaagaaagttgggtgcaatc
cccgatgattcctctctcaaaaacaaaaaagtcgttgccattgcactttctcacggtcat
ctcgatcacataggagctatagcaaagcttgctccccactatccaaacgttccaatctat
ggaactccctacacaataaagctggcaaaaggagaggtgaggagtgagcagtattttgag
gttacaaacccgatgtatgagacccagtatggggagattgttcaagttagcgagaattta
gctatagagtttgttcagattacccactcaatcccgcactcctcaatggtggttatccat
acgcccgaaggtgctgtagtttatgcgtgtgattataagtttgacaaccacaatcccctt
ggagagaagccagattacaagaggctcaaggagataggccaagaaggagtaaaaattttg
ataccagaatccacgagggcagctgaagaaacaaaaacgccaagtgaagcctctgcgaag
cttctcttggaggactttttctactatgaagggatggaagagaaaggactaatcaccacg
acctttgcctctcacatagcccgtctgcaagagctgatagagatagcaaacaatatgggg
aggcaagcggttttggtaggtagatctctagcaaagtacacaggcatagcgaaacagctc
ggtctaataaaaatgaaaggggcaaaagcggtgagaagcccaaatgctgttcagaaaaca
ctcagagaggtttctcaagctagggagaactatctcctaatagtcacaggtcatcaaggt
gagccgggagcagtgcttacaaggatggctaatggagaactctatgacatcggaaaagac
gacactgttgtgttttcggctggagtcatcccaaatcccctaaacatagcccaacgctat
gcccttgagacaaagctcagaatgagaggagtgagaatggttaaagatttacacgtctca
ggtcatgcaagcagggaagaccacagatatttgattaagcttttaaatccagagaatata
atccccgctcatggagagtttaggatgctcacccattatgctgagcttgccgaagaagag
gggtatctcataggaagggacgtgtttgtatcaagaaacggttacaaagtcgatgtgagg
tga
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