Thermococcus litoralis: OCC_07746
Help
Entry
OCC_07746 CDS
T02800
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
tlt
Thermococcus litoralis
Pathway
tlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCC_07746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlt03019
]
OCC_07746
Messenger RNA biogenesis [BR:
tlt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
OCC_07746
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
OCC_07746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
S1
OB_RRP5_4th
Auto_anti-p27
RRP4_S1
HVO_2753_ZBP
Trm112p
Prok-RING_1
PCB_OB
DZR_2
Zn_ribbon_PaaD
DZR
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
EHR79399
UniProt:
H3ZKU4
LinkDB
All DBs
Position
complement(375017..375616)
Genome browser
AA seq
199 aa
AA seq
DB search
MDKKEKKRVKDGDIVLPGDYLGVIEEFLPGEGIIEENGELYAARAGRVRINPEKIEISVE
PLTDTPPLPQVGDVVIARVIEVKPQAAIVQLLRIEGRKGYREIATSKLAGIHISQVRDGY
VESMSNEFKIGDIVRARVLTNEKSPIQLTTKGSDLGVVYALCSSCRTPLVRRGNVLICPK
CGRTETRKLSTYYRKLKLE
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaagaaaagaaaagggtaaaagatggagatatagttcttccaggggattat
cttggggttatcgaggagtttcttcctggtgagggcataatagaggagaatggagagctg
tatgcggcaagagctggaagagtaaggataaaccccgaaaagattgaaatatccgtggaa
ccattaaccgataccccacccctcccacaggtgggggatgttgtaatagcgagagttata
gaagtaaaaccacaagccgccatagttcagctgcttagaattgagggtagaaaggggtac
agagagatagcaacgtcaaaacttgctggaatacatatctctcaagttagggatggatac
gtggagtcaatgagcaacgagttcaaaattggggacattgttagggcgagggtattaacg
aatgagaagagccctatacagctcaccacaaagggttctgatttgggagtagtttatgcc
ctctgttcttcatgcaggactcctttagtgaggaggggaaacgtgctcatatgtccaaaa
tgcgggagaacagagacaagaaagctttcgacatactatagaaagctgaagctggagtaa
DBGET
integrated database retrieval system
