Thermococcus litoralis: OCC_08245
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Entry
OCC_08245 CDS
T02800
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tlt
Thermococcus litoralis
Pathway
tlt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OCC_08245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlt03019
]
OCC_08245
03009 Ribosome biogenesis [BR:
tlt03009
]
OCC_08245
Enzymes [BR:
tlt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OCC_08245
Messenger RNA biogenesis [BR:
tlt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OCC_08245
Ribosome biogenesis [BR:
tlt03009
]
Prokaryotic type
rRNA helicases
OCC_08245
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
AAA_22
UvrD-helicase
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
EHR79465
UniProt:
H3ZKN3
LinkDB
All DBs
Position
complement(2109030..2110172)
Genome browser
AA seq
380 aa
AA seq
DB search
MSFEKLGLSESSLNAIRRKGFKRPTDIQREVIPRLLGGNKDIIGQSQTGTGKTAAFALPL
IELIEEDIKDVQAIVITPTRELAIQVADEIRSLRGKKRIYVLPVYGGQPIGPQIKSLRKG
VHIVVGTPGRVIDHIERGTLSLSGVSYFILDEADRMLDMGFIEDIERILRYTNEEKRVLM
FSATIPREILRLARRYLKDYEVIRVQEKSLAPEQVEQCYFEVRPNNKFKLLCRILDNEDF
YGIVFCQTKKETRELAARLKAKGYKAEALNGDILQKGRERILERFRRGKTKILVATDVAA
RGLDVKGLTHVINYSVPQNPEAYVHRIGRTGREGKKGKAVTFVAPWESPKLRDIERTARV
NIKEMKHPRRQRQDMFFEAS
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaaagttaggactatcagaaagcagtttaaatgccatacggagaaaagga
ttcaaaagaccaaccgatatccagcgagaagtcattccaagacttctaggtgggaataaa
gatataattgggcaatcacaaactggaacaggtaaaaccgccgcgtttgcccttccgttg
atagagctcatagaggaggatataaaggatgtgcaggcgatagttataactccaacaagg
gagcttgcaatccaggttgcggatgaaataagatccttgagaggaaaaaagagaatctat
gttcttccagtctatggaggccagcctatagggcctcaaattaaaagcctaaggaaaggt
gtccacatagttgttggcactcctggaagggtaatagatcacatagagagaggcacactt
tcacttagcggtgtgagctactttatactggatgaagccgacagaatgctggatatgggc
tttatagaagatattgagagaattttgaggtatacaaatgaagagaaaagggtcctgatg
ttttctgctaccattccaagggagatccttcgcttggcaaggaggtatttaaaagattat
gaggtcataagagtccaagaaaaaagtctcgccccagagcaggttgaacagtgctatttt
gaagtgcgcccaaacaacaagtttaagcttttgtgcaggattcttgataacgaggacttt
tacgggatagttttctgccagacaaaaaaggagacaagagaactggcagctaggcttaag
gctaaagggtacaaagcagaggctttgaacggggatatccttcaaaaggggagagaaagg
attttggagcgttttagaaggggcaagactaaaatcttggttgcgacggatgttgcggca
agagggttagacgtcaagggcttaacgcatgtaataaactattcagtccctcagaatccg
gaggcttatgttcatagaattggcagaaccggaagagaaggcaagaaaggaaaagccgta
acctttgtggctccatgggaatcccccaagctgagggacattgaaaggactgcaagggta
aatatcaaagaaatgaaacatccaaggaggcaaagacaagacatgttttttgaagcttct
tga
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