Thalassospira lucentensis: R1T41_06085
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Entry
R1T41_06085 CDS
T09476
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tlu
Thalassospira lucentensis
Pathway
tlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R1T41_06085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlu03019
]
R1T41_06085
Enzymes [BR:
tlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R1T41_06085
Messenger RNA biogenesis [BR:
tlu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R1T41_06085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
P-loop_SecA
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WOI12151
LinkDB
All DBs
Position
complement(1199770..1201590)
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AA seq
606 aa
AA seq
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MTNFEGLNLIEPLLRNVEATGFTAPTEIQAKTIPALLEGRDLMGISQTGGGKTAAFCLPL
LQRLAENPKRPAPGQPRALILAPTRELVNQIGQCLRDFKKGIRLFSSVVYGGSPMGPQIQ
ELRRGVDILVATPGRLLDHMSRNTIRFDDIEVFILDEADRMLDMGFSEDVLTVAEVLPRE
HQTVMFSATMPPAVKHLTDRLLNNPVKVETAPQSSVTERVTQRGMFVKRHDKTSLLVQLL
KRQESERVLVFTKTKADADELSFQLRDEGVDTDAIHGDKQQRIRQKILRNFRNGQFPVLI
ATDVAARGIDVPGITHVINYDLPTDPENYVHRIGRTGRGSAEGIAISFCEPRDVRHLRNI
ERVIGQQVEIDEDHEFHSAPPARSSGGGGRDGGRGGRGGFGGGRDGGRGRGGFGGGRDGS
RDAGRGGRGGFGGGRDGARDGARSFGGPRRAEGDRDGARRFEGDREGGRAFGGDRDGGRR
FGQSDQPRGDRGGDRPARSDRNDRGGDRFDRKPRFDRAASDQRPDRAERSDRTERTDRGT
NFRPRGEGAPARDGERRFADKPRGERGFKNRDRDTRGRDFSDRPRRAEGGRGEARGGNQG
MKRRSA
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgactaattttgaagggctcaaccttatcgagcccctgctgcgcaacgttgaagctacc
ggtttcaccgcaccgaccgagattcaggcaaaaaccattccggcattgcttgaaggtcgt
gacctgatggggatttcccagacgggtggtggtaaaaccgccgcattctgcctgccgctg
ttgcagcgtcttgccgaaaatccgaaacgcccggcaccgggtcagccgcgcgcgcttatt
ctggcgccgacgcgtgaactggtaaatcagattggacagtgcctgcgcgatttcaaaaaa
ggcattcgcctgttttcttccgttgtttatggcggctcgccgatgggcccgcagattcag
gaattgcgccgtggcgttgatatcctggttgcgaccccgggtcgtctgcttgaccatatg
tcacgcaacaccatccgtttcgacgatatcgaagtcttcatccttgatgaagccgaccgt
atgctcgatatgggtttctcagaagacgttctgaccgttgccgaagtgctgccacgtgag
caccagacggtgatgttctcggcaaccatgccgccggctgtcaaacatctgaccgaccgt
ctgttgaacaatccggttaaggttgaaaccgcgccgcagtccagcgtgaccgagcgtgtt
acccagcgtggcatgttcgtgaaacgtcacgacaagacctcgcttctggttcagttgctg
aaacgtcaggaaagcgaacgcgtacttgttttcaccaaaaccaaagccgatgcggacgaa
ctttcgttccagttgcgcgatgaaggtgttgataccgacgccatccatggtgacaagcag
cagcgtattcgccagaaaatcctgcggaatttccgtaatggccagttcccggtcctgatc
gcaactgacgttgcagcacgtggtattgacgttccgggcatcacgcatgtcatcaactat
gacctgccgaccgatccggaaaactatgtgcaccgcattggccgtaccggtcgcggcagt
gccgaaggtattgcgatttcgttctgcgaaccgcgtgacgttcgtcatttgcgcaacatt
gaacgcgtgatcggccagcaggttgaaatcgacgaagatcatgaattccattcggctccg
cctgcccgttcgtcgggcggcggcggtcgcgatggtggtcgtggtggtcgcggcggattt
ggcggtggtcgtgatggcggtcgtggtcgtggcggtttcggcggcggtcgtgacggtagt
cgcgatgctggccgtggtggtcgcggtggatttggtggtggccgtgatggcgcccgcgac
ggtgcccgttcattcggcggtccgcgtcgtgccgaaggtgaccgtgatggtgcgcgccgt
ttcgaaggtgatcgcgaaggcggtcgtgcttttggtggcgatcgtgacggtggtcgtcgt
tttggccagtcagatcagccgcgtggtgatcgcggtggcgatcgtccggcccgttcggat
cgtaatgatcgcggtggtgaccgttttgatcgcaaaccgcgttttgaccgcgctgctagc
gatcagcgtccggatcgtgccgagcgttctgatcgtaccgagcgtacggatcgtggcacc
aacttccgcccgcgtggcgaaggtgcaccggcacgtgatggcgagcgtcgttttgctgac
aagccgcgcggtgaacgtggtttcaaaaatcgtgatcgcgatacccgcggtcgtgatttc
agtgatcgtccgcgccgtgccgaaggtggccgtggtgaagcccgtggtggcaaccagggc
atgaaacgccgttccgcctaa
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