Thalassospira lucentensis: R1T41_17405
Help
Entry
R1T41_17405 CDS
T09476
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tlu
Thalassospira lucentensis
Brite
KEGG Orthology (KO) [BR:
tlu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tlu03032
]
R1T41_17405 (topA)
03400 DNA repair and recombination proteins [BR:
tlu03400
]
R1T41_17405 (topA)
Enzymes [BR:
tlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R1T41_17405 (topA)
DNA replication proteins [BR:
tlu03032
]
Prokaryotic type
DNA Topoisomerases
R1T41_17405 (topA)
DNA repair and recombination proteins [BR:
tlu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R1T41_17405 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Motif
Other DBs
NCBI-ProteinID:
WOI13187
LinkDB
All DBs
Position
complement(3598793..3601444)
Genome browser
AA seq
883 aa
AA seq
DB search
MNLVIVESPAKAKTINKYLGDDYKVLASFGHIRDLPSKDGSVDPDNDFSMVWETDGRSEK
QIREIASAARDADTIYLATDPDREGEAISWHILEVLEQKKLLRGRDVHRVVFHEITKKAV
TDAIANPRELNQELVDAYLARRALDYLVGFNLSPVLWRKLPGSRSAGRVQSVALRLICER
EIEIEAFRPDEYWSLEAGFKVPEGNFTARLTHLNGEKLDKLALGNEGAATIAKEKVESRS
YTVSKVERKDVKRRPQPPFTTSTLQQEASRKLGFGAKRTMQLAQRLYEGVDIGGETVGLI
TYMRTDAVVLSGEALAAARRLITKDYGESYLPPSARSFANKAKNAQEAHEAIRPTDLFRR
PDQVARHLDKDQLNLYTLIWKRTVACQMEDAKFDQVAVDLSSNDNHVVLRANGSVVKFDG
FLKLYQEGKDDETEDENDRRLPPLKEGQKPDLGKVSIDQHFTQPPPRYTEASLVKKMEEL
GIGRPSTYASIISVLQDRDYVTLDKRRFVAQDRGRLVTAFLSKFFERYVQYNFTADLENQ
LDDVSNGSLAWRDVLNQFWAAFKGNVDEAKELKITDVLDALQVMLENYLFPAREDGTDPH
KCPKCADGTLSLKLGKFGAFLGCSNYPECNFTRPLVANENGGDSELDAGPKVLGIDKETG
KEITLRKGPYGVYVQLGEEEEVEGKNGKPKKVKPKRTSLPKGLEPSVVDLTKAEELLTLP
RLVGVFPDTGEEIKANVGRFGPYVQAGSIFASLKAEDDVLTVGENRAIALIADKREKAGK
EIGKHPDDGEPIFLADGRWGPFVKHKKTNANLPRDTNKEDVTLEMAIAALKEKEAKSGKP
AKATKAAAKKTTTKKAAAKKPTAQKTAAKKPAAKKTTKKEAAN
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
ataaatcttgtcatcgtcgaatccccggccaaagccaagacgatcaataaatatctcggt
gacgattacaaggtgctggcctcttttggtcacatccgcgatcttccgtcaaaagatgga
tcggttgatcccgacaatgatttttcgatggtctgggaaaccgatggccgttcggaaaaa
cagatccgcgagatcgcatcggccgcacgcgatgccgacaccatctatctcgcgactgac
ccggatcgcgaaggggaagcgatttcgtggcatattctggaagttctggaacagaaaaag
cttttgcgcggtcgcgacgttcatcgtgtcgtgttccacgagatcaccaaaaaggccgtg
acggacgcgattgccaatccgcgcgagcttaatcaggaactggtcgatgcctatctggcg
cgccgtgcccttgattatctggtgggctttaacctgtcgcctgtcctttggcgcaaattg
cccggttcgcggtctgcaggtcgcgtgcagtccgtcgcccttcgtctgatctgcgaacgc
gagatcgagatcgaagcattccgccccgacgaatactggtcgctggaagccggtttcaag
gtgcctgagggcaactttaccgcgcgcctgacccatctgaacggtgagaagctggacaag
ctggcactgggcaacgagggtgcggcaacgattgccaaggaaaaggtcgaaagccgcagc
tacacggtttcaaaggtcgaacgcaaggacgtcaaacgccgtccgcagccgcctttcacc
acatcgaccctgcagcaggaagcatcgcgcaagcttggttttggtgcaaaacgcacgatg
caacttgcgcagcgcctttatgaaggggttgatatcggtggcgagacggttggtctgatc
acctatatgcgtaccgacgccgtggttctttctggcgaggcactggccgcagcacgccgc
ctgattaccaaggattacggcgaaagttacctgccgccaagcgcacgcagctttgccaac
aaggccaagaacgcacaggaagcccacgaggccatccgtccgaccgacctgttccgtcgt
cccgatcaggttgcccgtcatcttgataaggatcagttgaacctttataccctgatctgg
aaacggaccgtggcctgccagatggaagacgccaaattcgatcaggttgcggttgatctg
tcatcgaatgacaatcacgtggttctgcgtgccaatggttcggtcgtcaaattcgacggt
ttcctgaagctgtatcaggaaggcaaggatgacgagaccgaggacgaaaatgatcgccgt
ctaccgccgttaaaagaaggccagaagcctgatcttggcaaagtcagtatcgaccagcat
ttcacccagcccccgccccgctataccgaggcaagcctggtcaagaagatggaagagctg
ggcattggccgtccgtcgacctatgcgtcgatcatttcggtgttgcaggatcgcgattat
gtgacgctggacaagcgccgctttgtcgcacaggatcgcggccgtctggtcacggcattc
ctgtcgaaattctttgaacgttatgtgcagtacaactttactgccgatctggaaaaccag
cttgatgacgtttcaaacggcagtcttgcctggcgcgatgtcctgaaccagttctgggcc
gcattcaagggcaatgttgacgaagccaaggaactgaagatcaccgatgtgcttgatgcg
cttcaggtgatgcttgaaaattacctgttcccggcacgcgaagatggtacagacccgcat
aaatgcccgaaatgtgccgatggcacgctcagcctcaagctcggcaaattcggtgcgttc
ctcggctgttcgaattatccggaatgcaactttacccgtccgctggttgccaatgaaaat
ggcggtgattccgaacttgatgccgggcccaaggtgcttggcatcgataaggaaaccggc
aaggaaatcaccctgcgcaaaggcccgtatggcgtttatgtgcaactgggtgaagaagag
gaagttgaaggcaagaacggcaaacccaaaaaggtcaagccgaagcggacatcgcttcca
aaagggctggagccatcagttgtcgatctgaccaaggcggaagaattgctgacattgcca
cgtctggtcggcgtcttccccgacaccggcgaggaaatcaaggccaatgtcggccggttt
ggtccctatgttcaggcaggcagcatctttgcgtcgcttaaggccgaggatgacgttctg
acggttggtgaaaaccgtgcgattgcgctgattgcggacaaacgcgaaaaggccggcaag
gaaattggcaaacatccggatgacggcgaaccgatattcctagctgatggccgttggggc
ccgtttgtcaaacacaagaaaaccaatgccaacctgccgcgtgacacaaacaaggaagat
gtcacgctggaaatggccattgcggcgctgaaggaaaaggaagccaaatcgggcaaaccg
gccaaggcgaccaaagccgccgcaaaaaagacaacaacaaaaaaggcggccgcgaagaaa
ccgaccgcccaaaagaccgctgcaaagaaacccgcagccaagaaaacaacgaagaaagag
gcggcgaactaa
DBGET
integrated database retrieval system
