Thalassospira lucentensis: R1T41_18275
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Entry
R1T41_18275 CDS
T09476
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tlu
Thalassospira lucentensis
Pathway
tlu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tlu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R1T41_18275 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tlu03400
]
R1T41_18275 (mfd)
Enzymes [BR:
tlu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R1T41_18275 (mfd)
DNA repair and recombination proteins [BR:
tlu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R1T41_18275 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
Cas3-like_C_2
AAA_16
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WOI10452
LinkDB
All DBs
Position
3777629..3781126
Genome browser
AA seq
1165 aa
AA seq
DB search
MSKLKEIISTKGRKRLCGVPEGADALLLRELLDASVNNSTILHVVRDDKRMAQLAEALAF
FAGEVEVLTLPAWDCLPYDRVSPIAEVTARRVETLTTLAEDIKPASGQGRIVLATAAAIM
QRVPRVDVMRDGKLTFKSGQEHSRADLTGYFDRMGYNRAEQVMEPGDYAVRGDILDIFAP
GMKEPVRLDFFGDEIESIRRFDVETQRTVGRINEIALLPVGEVFLDQDSISRFRSGYREL
FGVVSQADPLYESISNGLKYGGMEHWLPLFHDGMDTVFAYLPDVMVSFDHQYGEVIENRL
EMIDDYYQARLNIKGGGLSGDNVYKPVPPERLYLDQAEFDRMLNDRTVLELSPYYEEESP
ERAVFDMGARPGRDFGDVRARADTNLYDELRDFISVQRGKNQQVVIAAYSDGSRDRMVSV
LREHGVAKVVTAECWEDITNDLTPEQLAIVILDLEHGFRREGLWILSEQDILGDRMSRPG
GRRRKAENFLREASEISEGDLVVHLDHGIGRYLGLRTVTAGGAPHDCLELEYDGGDKLFV
PVENIEVLSRYGSDEGLSILDKLGGVAWQARKAKLRERIRDMAGKLIKVAAERHLRKGAA
LTAPEGSYDEFCASFPFAETEDQARAIRDTLDDLAAGKPMDRLVCGDVGFGKTEVALRAA
FAAVMSGKQVAIVAPTTLLCRQHYLTFRQRFDGLPVRVEQLSRLVTGKNAKLVKDNLESG
HVDIVCGTHALLGNGVKFKDLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLTATPIPRT
LQLALTGVKELSIIATPPVDRLAVRTYITPYDPVVVREAILRERHRGGQIFYVCPRVNEL
GRIAKELETLVPEIKFDVAHGQMGPRDLEQVMTDFTDRKFDLLLATNIIESGIDVPNANT
MIIHRADMFGLAQLYQLRGRIGRSKQRAYAYLTLPNGKKLTATALKRLEVMQTLDSLGAG
FNLASHDLDIRGAGNLLGEEQSGHIKEVGIELYQQMIEEAVAEAKGEIEADDATSFVPQI
NVGMPVLIPDRYVPDLGVRLGLYRRISELRSREEVDQFAAEMIDRFGKLPKEVENLLDVV
MIKQWCRTSNIEKLDAGPKGALITLRNNEFPNPAGLVGFIQQQVGVARLRPDHKIVYAAG
WDGPTDRLEGLKRLMRRLADIAAKA
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaattaaaagaaattatttcgactaaaggtcgcaaacggctgtgtggcgtgcca
gagggtgccgacgctttgctgctgcgtgaattgctggatgcatcggtaaacaactcaaca
atcctgcatgtcgtgcgcgatgataaacgcatggcccagcttgcggaggcacttgctttc
tttgcgggcgaggtcgaggtcttaaccctgcctgcatgggattgcttgccctatgaccgg
gtttcgccgattgccgaagtaacggcacgccgtgttgaaacattgacgacactggccgag
gatatcaaaccggccagtgggcagggacgtattgttctggcaacagcggccgcgatcatg
cagcgggttccgcgggtcgacgtcatgcgggatggcaaactgacctttaagtcaggacag
gaacattcgcgcgccgatctgaccggatatttcgatcggatgggctataaccgtgccgaa
caggttatggagccaggtgattacgcggttcgcggtgatattcttgatatctttgcaccc
ggcatgaaagagcccgtgcggcttgatttctttggggacgagatcgaaagtattcgccgg
tttgacgttgaaacgcagcgtaccgtcggacggatcaatgaaatcgcccttttgcccgtt
ggcgaagtgttcctcgatcaggacagcatttcccggttccgcagtggatatcgcgaactt
tttggtgtcgtatcgcaagctgatccactttatgagtcgatcagtaacggcttgaaatat
ggtggcatggaacattggctgccgctattccacgacggtatggacactgtttttgcctat
ctgccggatgtaatggtcagttttgatcatcaatatggcgaggttatcgaaaaccgcctt
gagatgattgacgattattatcaggcgcgcctgaacataaagggcggcgggctttcgggg
gacaatgtttacaaacctgttccacccgaacggctttatctggatcaggccgaatttgac
cgaatgctgaatgatcgcacggttcttgagctttcaccctattacgaggaagaaagtcct
gagcgtgccgtttttgatatgggcgcacgaccgggacgtgattttggcgatgtgcgggca
cgagccgataccaacctttatgacgagctacgcgatttcatttctgtccagcgtgggaaa
aatcagcaggttgttattgcggcctattctgacggatcacgtgaccgtatggtttccgtc
ttgcgcgaacatggtgttgccaaggttgtaaccgcggaatgctgggaagacatcaccaat
gatttgacaccggaacagctcgccattgttattcttgaccttgagcatggtttccgccgc
gaaggcctttggatcctatcggaacaggatattctgggcgaccgcatgagccgcccgggc
ggacgccgtcgcaaggccgaaaacttcctgcgggaagcatccgagatttcagagggtgac
ctcgtcgttcaccttgatcacgggatcggtcgctatcttggtcttcggaccgttaccgca
ggtggtgcgccacacgattgtctggaactggaatatgacggcggggacaagctttttgtc
ccggtagaaaatattgaagttctgtcgcgatatggctcggacgagggattgtcgatcctt
gacaagcttggcggtgttgcatggcaagcccgcaaagccaagctgcgcgaacgtatccgt
gatatggctggcaagctgatcaaggttgccgccgaacgccatctgcgcaaaggagcggcc
ttgaccgcccccgaaggcagttatgacgagttctgtgcaagctttccgtttgccgaaacc
gaagatcaggcgcgtgccattcgtgacacgttggacgatctcgcggcgggcaaacctatg
gatcgtcttgtgtgtggtgatgtcggttttggtaagacagaggttgcattgcgtgctgcc
tttgccgcggtgatgtccggtaagcaggttgcgattgtcgccccgaccacgttgttgtgc
cggcagcattacctgaccttcaggcaacgctttgatgggcttccggtccgggttgaacaa
ctgtcgcgtctggtaaccggtaagaacgccaaactggtcaaggacaaccttgaaagcgga
catgtcgatatcgtatgcggtacgcacgcactgttgggcaatggtgtaaagttcaaggac
cttgggcttctgattatcgatgaagagcagcatttcggcgtaaagcacaaggaacgcctg
aaagagcttaaaaccgatgttcacgttctgacgctaacggcgacgccgatcccgcgcaca
ttgcagcttgcgctgaccggagttaaagaactttcgattattgcaacaccgccggtcgat
cgcttagctgttcggacctatatcacgccttatgacccggtagtcgtgcgcgaagcgatc
ctgcgtgaacgtcaccgtggggggcaaatcttctatgtgtgtccgcgggtcaatgaactt
ggacggattgcgaaagaacttgaaacacttgtgcctgaaatcaagtttgacgttgcacat
ggccaaatggggcctcgtgaccttgaacaggtgatgaccgatttcaccgatcgcaaattt
gatttgttgcttgcgaccaacatcattgagtccggcatcgatgttccgaacgccaatacc
atgatcatccatcgtgctgacatgttcgggctggcacagctttatcagttgcgcgggcgt
atcggccgatcaaaacagcgtgcatatgcctatctgacgttgccgaatggcaagaaactc
accgcaacggcgctgaaacgacttgaggtcatgcagacgcttgacagtcttggtgccggt
tttaatcttgccagccatgaccttgacattcgtggggcagggaacctgcttggcgaggaa
caatccggccatatcaaggaagtagggatcgaactttatcagcaaatgatcgaagaagcc
gtggcagaagccaagggagagatcgaagccgatgatgcgacatccttcgtcccgcagatc
aatgttggaatgccggttctgataccggatcgctatgtgcctgatcttggtgtgcgactt
ggcctgtatcgtcgtatctcggaattacgttcacgcgaggaagtcgatcaattcgccgcc
gagatgattgaccggttcggcaaattgccgaaggaagttgaaaaccttctggatgtggtc
atgatcaagcagtggtgccggacatcgaatatcgaaaaacttgatgccggtccgaaaggt
gcgctgatcacgctacgcaataacgaatttccgaacccggccggtctggttggttttatc
cagcaacaggttggcgtggcacgtttgcgtccggatcacaagatcgtctatgccgctggt
tgggatggtccgacagaccgtctggagggtttgaagcgtctgatgcgtcgtctggccgat
attgcggcaaaggcataa
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integrated database retrieval system
