Thalassospira lucentensis: R1T41_20880
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Entry
R1T41_20880 CDS
T09476
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tlu
Thalassospira lucentensis
Pathway
tlu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tlu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R1T41_20880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tlu03019
]
R1T41_20880
03009 Ribosome biogenesis [BR:
tlu03009
]
R1T41_20880
Enzymes [BR:
tlu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
R1T41_20880
Messenger RNA biogenesis [BR:
tlu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R1T41_20880
Ribosome biogenesis [BR:
tlu03009
]
Prokaryotic type
rRNA processing factors
R1T41_20880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WOI10943
LinkDB
All DBs
Position
4329471..4332443
Genome browser
AA seq
990 aa
AA seq
DB search
MVKRMLIDATHAEESRVVVINGNRLEEYDVETSTKKQIKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHSDYYQIPVADREALSRSHSDVKDADIVEDNIGDASEGNDTPKKEK
KPARTRNRRKPRAKASDETAVETDAEAPATDENADSAATVAADAPASDDAGDEDAKPRRR
RTRNRRKKSDDVEASGDDSADASSNDGDDTDGSGGGNAAMSAEIAELTVDIETEPAGAAE
GEEEIDDLGGDDGDEFSDSHRPQMQKRYKIQEVIKRRQILLVQVVKEERGNKGAALSTFL
SLAGRYCVLMPNTPRGGGISRKITNAQDRKRLKSILAELEIPDGMAVIVRTAGSERTKAE
IKRDFDYLMRLWDRIRETTLQSQAPCLIYEEADLIKRSIRDLYARDVDEVLVEGDEGYRI
AKDFMKMLMPSHAKRVQPYKDQGVPLFHRFQVESQLDAMLNPVVQLKSGGYIVINPTEAL
VAIDVNSGRSTRERNIEETAYKTNLEAAEELARQLRLRDLAGLIVVDFIDMEDHRNQASV
ERKLKEAMRNDRARLQIGRISPFGLLEMSRQRLRPSLVESAFEVCAHCRGVGLVRSIESA
ALHLLRVLEEEGMRRRSGALTVHVASEVALYILNRKRDTLAEIEQRYGFTVMIFGDDSLI
SPDHRIERTRAKKGDEEEALPVLNTDSVSLTAIESPVEADEDDEEDDVAEARDTRDQRDD
DDQGNKRRRRRRRRRGRNDDRDDRNDQNDADASDDAAGASDRSDQDDNEDDDDDEAQRKR
RRRGKRGGRRRSRRQEFENAPRVKSPADDAQATALRRDRDHSAPEGHAEDQVVDADSEGQ
DADSFDQEGVRAGRQRSTTAPAPARPRRERRDRNDNRRNRRDRNDRNDRADVKNIPIQSG
PAPETAEEIAKEAVSAPAQSPAETVVEKPASPAPAAAPAAEKSEPKPEPKKPAPKAEKAA
EPVASEPVSTEPAKDEKPKPKKRGWWSLGR
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaacgcatgcttatcgatgcaacgcacgcggaagaaagccgcgtcgttgttatt
aatggaaatcgcctagaagaatacgacgtcgaaacttcgaccaagaagcagataaaagga
aatatctatctcgcgaaagtgacgcgtgtagaaccgtccctgcaggcggccttcgtcgat
tacggcggaaaccgccatggtttcctcgccttcagcgaaatccattccgactattaccag
atcccggtcgcagatcgcgaagcactttcgcgtagccacagcgacgtcaaggatgccgac
atcgtcgaagacaatatcggcgacgcatccgagggcaacgataccccgaaaaaagaaaag
aaaccggcccgtacccgcaatcgccgcaaaccgcgtgcgaaggcatcggacgaaaccgcg
gttgaaaccgatgcagaagcaccggcaaccgacgaaaatgccgatagtgcggcaactgtt
gcagcagacgccccggcaagtgacgatgcaggcgatgaggatgcaaaaccgcgccgtcgt
cgcacacgcaaccgtcgcaagaaatccgatgatgtcgaggcatcaggtgatgacagcgcg
gatgcatcgtcgaatgacggtgatgataccgatggatcgggcggcggtaatgctgccatg
tcggccgaaattgccgaactgaccgtcgatatcgaaaccgaaccggccggtgcggccgaa
ggcgaagaagaaatcgacgatctgggtggcgatgacggagatgaattctccgacagtcat
cgtccgcagatgcagaaacgctataaaattcaggaagtgatcaagcgccgccagattctg
ctggtgcaggtcgtcaaggaagaacgcggcaacaagggtgccgccctttcgaccttcctg
tcgctggcgggccgttattgcgtactgatgccaaacaccccgcgtggtggcggcatttcg
cgcaagatcaccaatgcacaggaccgcaagcgcctgaaatccattctggccgagctggaa
attccggacggcatggccgttatcgtgcgtaccgccggttcggaacgcaccaaggccgag
attaaacgcgacttcgattatctgatgcgtttgtgggatcgtatccgcgaaaccaccctt
cagagccaggcaccgtgcctgatttacgaagaagccgatctgatcaaacgttccatccgt
gacctttatgcacgcgatgttgatgaagttctggtcgaaggtgacgaaggttaccggatc
gccaaagacttcatgaagatgttgatgccgtcacatgcgaagcgtgtgcagccctacaag
gatcagggcgtgccgctgttccaccgtttccaggtggaaagccagcttgacgcgatgctc
aatccggtcgttcagcttaaatcgggtggttatatcgttatcaacccgaccgaagcactg
gtcgcgattgacgttaactcgggccgttcgacccgtgaacgcaacatcgaagaaaccgca
tacaagaccaaccttgaagccgccgaagaactggcccgccagttgcgcctgcgcgacctt
gccggtctgatcgtcgtcgacttcatcgatatggaagaccaccgcaaccaggcatcggtt
gaacgcaagcttaaagaagccatgcgcaatgaccgtgcccgcctgcagatcggccgtatc
agcccgttcggtcttttggaaatgtcgcgtcagcgcctgcgtccgtcgcttgttgaaagc
gcgttcgaggtttgcgcccattgccgtggtgtcggccttgtccgttcgatcgaaagtgcc
gcccttcaccttctgcgcgtgcttgaagaagaaggcatgcgccgtcgttccggtgcactt
accgtgcatgtcgcaagcgaagtcgcgctttatatcctgaaccgcaaacgcgatacgctg
gctgaaatcgaacagcgctatggctttacggtcatgatctttggcgatgacagcctgatt
tcgccagatcaccgcatcgagcgcacacgcgcgaaaaaaggtgacgaggaagaagccctg
ccggttctgaacaccgacagcgtttcgctgacggcgattgaaagcccggttgaagcggac
gaagacgacgaagaagatgacgtcgccgaagcccgtgacacccgcgatcagcgcgatgac
gatgatcagggcaacaaacgccgccgccgtcgccgtcgccgtcgtggccgcaatgatgac
cgtgatgatcgcaatgatcagaatgacgccgatgcatccgatgatgccgctggtgcatcg
gatcgttccgatcaggacgataacgaagatgatgacgatgacgaggcacagcgcaaacgc
cgtcgtcgcggcaaacgtggtggtcgccgtcgttcgcgccgtcaggaatttgagaacgca
ccgcgtgtcaaatcgcctgccgatgatgcacaggcaaccgcccttcgccgggatcgtgat
cacagcgcaccggaaggccatgctgaagatcaggttgttgatgccgacagcgaaggtcag
gacgcagacagctttgatcaggaaggtgtccgcgccggtcgccagcgcagcacgaccgcc
ccggcaccggcacggccgcgccgcgaacgtcgtgatcgcaatgacaatcgccgcaatcgt
cgggatcgcaatgatcgtaacgaccgggctgatgtgaaaaacatcccgatccagagcggc
cctgccccggaaacagcggaagaaatcgccaaggaagcggtttcggcaccggcacaaagc
ccggcggaaaccgtggtggaaaaaccggcaagcccggcccccgcggcagcaccggcagcg
gaaaaatccgaaccgaagccagagccgaagaaaccggcaccgaaagccgaaaaggccgcc
gagccggtggcaagtgaaccggtttcaactgagccggcaaaagacgaaaaaccgaagccg
aagaaacgcggctggtggagccttggtcgttaa
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