Thermotoga maritima MSB8: TM1345
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Entry
TM1345 CDS
T00022
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
tma
Thermotoga maritima MSB8
Pathway
tma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TM1345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tma03019
]
TM1345
03016 Transfer RNA biogenesis [BR:
tma03016
]
TM1345
Enzymes [BR:
tma01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TM1345
Messenger RNA biogenesis [BR:
tma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TM1345
Transfer RNA biogenesis [BR:
tma03016
]
Prokaryotic type
tRNA degradation factors
TM1345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AAD36416
UniProt:
Q9X166
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All DBs
Position
1362919..1365045
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AA seq
708 aa
AA seq
DB search
MKEWRRNILGRELVVQYGKVAKQSSGSALVRFGDTVVLATANISDKAVEGIDFVPLTVEF
QERFYAAGKIPGGFIKREGKPSESAILSARLIDRPIRPLFPKKLRNEVQVIVTVLSVDPN
VPPDVVGIFAASLALNVSKIPFEGIVAGIRVGYRDGQFIALPSEEDIEKGLMDITVAGTK
DAVTMVEGEAKEVTEEDMVKALRFAHSVIKELVDFQEEILSEFNVEKIPVVEPTPPEGLV
EAFKDLLNKEELERRILVKVKKEREVALKEYEEQLLNQIAEKLSVTDLEGIKPFVSELYE
DAVKKTMRRLIVEKGIRADGRKPTEIRPISCEVGLFPRTHGSALFTRGETQSLGIVTLGA
PMDVQIIDTLLEEGVKRFMLHYNFPPFCTGEVKPLRGPSRREIGHGHLAERALKNMLPPE
EEFPYTIRVVSEILESNGSSSMATVCSGSLALMDAGVPIKKHVAGIAMGLILEEDAEIIL
TDIIGMEDHYGDMDFKVAGTRDGITAFQMDCKVSGVSDELLMKALMQAREARMYILDRMY
ETISAPRPHLSKYAPIIKVTKVDPEKVADVIGPGGRVIKKIIKDFDVKVEIDDETGLVKV
VGSSEENVDKAIELIREIAKEIEVGEVLEGKVTRIEPYGLFIEVRPGKIGLLHQSKVGED
MRQFLKKVKVGDTIKVQVINIDDLGRLQFKRVTEGENTQHGKTHSKRN
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaatggcgacgtaacatccttggaagagaactcgtagttcagtacggaaaagta
gcgaaacaatcgagtggttcagccctggtgaggtttggtgacacagttgttctggcaacc
gcaaacatttcagacaaagcagtggaaggaatcgactttgtacctctcaccgttgagttc
caggaaaggttctacgctgccggaaagatccccggtggtttcataaagagggaaggtaaa
cccagcgaatccgctattctctcagcccgcctcatcgacagaccgataaggcctctcttt
ccaaaaaaactcagaaacgaggtccaggttatcgtgaccgtgctttcggtggatccgaac
gttccaccggacgttgtgggaatctttgccgcgtccctcgcattgaacgtttcaaagata
ccgtttgaaggtatagtggcgggtattagggttggttacagagacggacagttcatagcc
ttacccagtgaggaagacatagaaaagggtctgatggatatcaccgttgctggaacaaaa
gacgctgtcaccatggtcgaaggtgaagcaaaagaagtaacagaagaagatatggtgaag
gccttgagattcgcccactccgtcataaaagaactagtcgatttccaggaagagattctc
tcagagttcaacgtggagaaaatccccgttgtcgagcccacaccacctgaaggcctcgtt
gaggctttcaaagatcttctaaacaaagaagaactggaaagaagaatcctcgtaaaggtg
aagaaggaaagagaagtggctctcaaagagtacgaagaacagcttctgaatcagattgca
gaaaaattgtccgtaaccgatttggaaggaatcaaaccctttgtctcggaactctatgaa
gatgccgtcaaaaaaacaatgaggagattgatagtggagaagggtatcagagcggacggg
agaaaaccgaccgagatcagacccatctcctgcgaggttggattgttcccgagaacacat
ggctctgctcttttcaccagaggggaaacacagagtctcggtatcgttactctcggcgct
cccatggacgttcagatcatagacacactcctcgaagaaggcgttaagaggttcatgctg
cactacaactttcctccgttctgtacaggagaggtgaagccgctcagaggtcccagcaga
agggaaatcgggcatggacatctggcagaaagagctctgaagaacatgcttccacccgaa
gaagagttcccctacaccataagagtggtttctgagatcctggagtccaacggttcttcc
tcaatggccacggtgtgttcaggatccctggcgctgatggatgctggagttcctatcaag
aaacacgttgcaggaatagcgatggggctcattcttgaagaagacgccgagatcatactc
acagacatcattggaatggaagaccactacggtgatatggacttcaaagtggctggaacg
agagatggaataactgccttccagatggactgtaaggtctcaggtgtctcagatgaactc
ctcatgaaagcgctcatgcaggcaagggaagcgagaatgtacattctcgacaggatgtat
gaaaccatctctgctccaagaccgcatctgtccaagtatgcaccgatcataaaggtaacc
aaggtcgatccagaaaaagtggcagatgtcataggacctggaggcagagtgataaagaag
atcataaaagacttcgatgtgaaggtggagatcgacgacgaaacaggcctcgtcaaggtc
gttggaagttctgaagaaaacgttgacaaggccatcgaactcataagggaaatagccaaa
gaaatagaagtgggagaagttctggaaggaaaggtcacaaggatagaaccttacggactg
ttcatagaggtgagaccaggtaagataggcctccttcatcagagcaaagtaggagaagat
atgaggcagttcttgaaaaaggtgaaagtcggtgataccataaaggtacaggtgatcaac
atagacgacctcggaagactgcagttcaaacgtgtcacagagggggaaaacactcagcat
ggaaagacacacagtaaacgaaattga
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