Thermotoga maritima MSB8: TM1357
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Entry
TM1357 CDS
T00022
Name
(GenBank) conserved hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tma
Thermotoga maritima MSB8
Brite
KEGG Orthology (KO) [BR:
tma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tma03016
]
TM1357
Enzymes [BR:
tma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TM1357
Transfer RNA biogenesis [BR:
tma03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TM1357
Prokaryotic type
tRNA splicing ligases
TM1357
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAD36428
UniProt:
Q9X178
LinkDB
All DBs
Position
complement(1374672..1376096)
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AA seq
474 aa
AA seq
DB search
MKIERLDKYIWKIPKEGDMKVDAIIFTDAESVNDPQFREAMKQLMNVATLPGIVKYALAM
PDIHWGYGFPIGGVAAFDVKEGIISPGGVGFDINCGVRLMKTDLTYEDVKDRMRSLVEAI
YEFVPAGVGSTGDIVLGKKGLRKVLVEGAEWAVKSGYGLEEDLERIEDGGKIHPADPSYV
SEEAFERGSDELGTLGAGNHFVEVQMVQEIYDEELAEFFGLEIGTITVMIHSGSRGFGHQ
VATDYIRLMRDNLKEHNKNLPDKQLINAPFEHPLGQAYYSAMNCAANYAFANREILGHLV
RKAFWKVFGRDTRVDLIYDVAHNIAKVEEYEVDGKRRKLVVHRKGATRSLGPGSEKVPSI
YREVGQPVIIPGDMGTASYLLVGTKKAEEKTFGSTAHGAGRVLGRSAALKKLDYREVLDE
LAEKNIVVMSKSKKTLVEEAPEVYKDVDRVVQIVHEIGISRKVARMIPLGVVKG
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagaaagactcgataaatacatctggaaaattccaaaagagggagatatgaag
gttgacgcgatcatattcacggacgccgagagtgtgaacgatcctcagttcagagaagcg
atgaaacagctcatgaacgtggccacgcttcccggcattgtgaaatacgccctcgccatg
ccggacatacactggggttacggctttccaataggaggagtcgccgctttcgatgtgaaa
gaaggaatcatttcgccgggtggtgtgggtttcgatataaactgtggagtacgcctgatg
aagacagatctcacctacgaagatgtgaaagatagaatgaggtctcttgtcgaagctata
tacgaattcgttcccgcgggtgttggttcaacgggagacatcgttctcggcaagaagggg
ctcaggaaagttctcgttgaaggtgcggagtgggctgtcaagtcagggtacggtcttgag
gaagatctggaaagaatcgaagacggtggaaagatacatccagcggatccctcgtacgta
tcggaggaagcgttcgagagaggaagtgacgagctcggaactctcggtgcgggaaaccac
ttcgtggaggttcaaatggttcaggaaatatacgacgaagaactcgctgaatttttcggt
ctggagatcggtaccatcacggtgatgattcactccggaagcagaggattcggacatcag
gttgcgaccgactacataaggctcatgagggataatctgaaggaacacaacaaaaatcta
cccgacaaacagcttataaacgctccgttcgaacatccacttggacaggcctattattct
gccatgaattgtgcagcgaactacgcgttcgcgaacagggagatcctcgggcatctcgtt
agaaaagctttctggaaagtgttcgggagagacacacgtgttgatctcatctacgacgtt
gctcacaacatcgcaaaagtggaagagtacgaagttgacggaaaaagaagaaaactggtc
gtccacagaaagggtgccacacgttctcttggtcccggaagcgaaaaggttccttcgatc
tacagagaagtgggacagcccgtcatcataccgggtgacatggggactgcttcctatctt
ctggtaggaacaaagaaagccgaagaaaagaccttcggttccaccgcacacggagcgggg
agagtccttggaaggtccgctgccctgaagaagctggattacagggaagttctcgatgaa
ctggcagaaaaaaatattgtcgtcatgagcaagagtaaaaagactctggttgaagaagct
cctgaagtttacaaagacgtggacagagtggtgcagatcgttcatgagataggtatttcg
agaaaagtagccaggatgattcctcttggtgttgtgaaggggtga
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