Thermosulfurimonas marina: FVE67_02975
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Entry
FVE67_02975 CDS
T06536
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tmai
Thermosulfurimonas marina
Pathway
tmai03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tmai00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FVE67_02975 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmai03021
]
FVE67_02975 (rpoC)
03400 DNA repair and recombination proteins [BR:
tmai03400
]
FVE67_02975 (rpoC)
Enzymes [BR:
tmai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FVE67_02975 (rpoC)
Transcription machinery [BR:
tmai03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FVE67_02975 (rpoC)
DNA repair and recombination proteins [BR:
tmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FVE67_02975 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
TyeA
DUF2543
Motif
Other DBs
NCBI-ProteinID:
QJA05826
UniProt:
A0A6H1WRR1
LinkDB
All DBs
Position
complement(563895..568001)
Genome browser
AA seq
1368 aa
AA seq
DB search
MEELFSYFTKPKDPMDIKAIRLGIASPERIREWSHGEVKKPETINYRTLKPERDGLFCAK
IFGPVKDYECLCGKYKRAKHRGVICEKCGVEVIQSKVRRERMGHIELAAPVAHIWFLRSV
PSKIGALLDLTLKELESVLYFEKYIVIESEVPELSPRKVLTEEQVQAFRQKYGEKFRVGM
GAEAIREILRTINLDEEAERIRAEIEKTSSEARRKKLGKRLRVVEALRQSGNRPEWMILE
VVPVIPPELRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLMELDAPEVIVRNEMRMLQ
EAVDTLFDNGRRGRPVTGPNRRPLKSLSDMLRGKQGRFRQNLLGKRVDFSGRSVIVAGPE
LRMHQCGLPKKMALELFKPFIYHWLEKKGYATTIKTAKRLVEEEDPLVWDALEEIVKEFP
VMLNRAPTLHRLGIQAFEPVLIDSKAIQLHPLVCVAYNADFDGDQMAVHVPLSVEAQTEC
RVLLLSTNNILLPASGVPVVYPTQDMVLGLFYMTMERPFARGEGRAFRNREEALLAYQEG
AVDLQARIKVRLDGKLVETTPGRLIVSTIVPEEIPFEEYNKPLRKKELQRLIDLSYRRAG
AKKTVIFADRIKDLGYQMATEAGLSICVDYLVIPKKKAEILAEAEKKVEEIRRQYQEGLI
TDGERYNKTVDIWSAATEKVTQEMVKEMETAEYVGPNGEKVVGPSMNPVYIMAYSGARGS
IDQIRQLAGMRGLMAKPSGEIIETPIKSNFREGLSVLEYFVSTHGARKGLADTALKTANA
GYLTRRLVDVAQDVTIVEEDCGTIDGIEVGHLIEAGEIMEPVWDRVLGRVALEDVVDPVT
GEVLVKANEEIDEEAVKRLREAGIEKVAIRSVLTCQSRYGVCAKCYGRDLATGRMVEIGE
AVGIIAAQSIGEPGTQLTMRTFHIGGTASRAVEQSEHRAQTQGQVKFINLRTVRARDGSL
VALNRQGEIAIVAPDGREKERYPVVYGAKIRVKEGQEVKPGDLLVEWDPFTNPIITEVSG
KVKFGDIIDGVTVDERTDPITGRVSIIVREYKLTDYRPRISIKDERGRTKKLPSGRGEAR
YLLPVGAILTVQEGDYVEAGDVIAKIPRETVKTKDITGGLPRVAELFEARKPKDYAVISE
IDGEVLFDKELKGKRKIVVKPEVGEPKEYLIPKGKYLAVQEGDYIRAGDPLIEGSPNPHD
ILRVKGVKELAKFLVEEIQEVYRLQGVRINDKHFEVIVRQMLKKVKIKEVGDTRFMIGEL
VDRHVFEEENERVLRQGGRPAVAEPVVLGITKAALYTESWLSAASFQETTRVLTDAALAG
KVDYLRGLKENMIIGRLIPAGTGRVYYDMRAEQKALEKEKKAELELPF
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atggaggagcttttctcctactttaccaagcccaaggaccccatggatatcaaggccatc
cggctggggatcgcctctccggagaggatccgggagtggagtcacggagaggtcaagaag
ccggagaccatcaattaccgcaccctcaagcccgagcgggacggactcttctgcgccaag
atcttcgggccggttaaggattacgagtgtctctgtggaaagtacaagcgggccaagcac
cggggggtgatctgcgagaagtgcggggtggaggtcattcagagcaaggtgcgccgggaa
cgcatggggcacattgagctggcggctccggtggcccatatctggttcctgcgtagcgtg
cctagcaagatcggggcccttctggatctcacccttaaagagctggagtctgttctttac
tttgaaaagtacatcgtgatcgaaagcgaggtcccggagctttcgccgcgcaaggtgctc
accgaggagcaggtccaggccttccgccagaagtacggcgagaagttccgggtgggcatg
ggggcggaggccatccgggagatcctgcgcaccattaatctggatgaggaggcggagagg
atccgggcggagatagaaaaaacttccagtgaggcccggcgcaagaagctgggcaagcgc
ctacgggtggtggaggccctacgccagtccgggaatcggccggagtggatgatcctggag
gtggttccggtaattcctccggagttgcgccccctggtgccccttgagggagggcgtttc
gccacctcggacctcaacgacctttatcgtcgggtgatcaaccggaataaccgtctcaag
cgtctgatggagctcgacgctccggaggtcattgtgcgcaacgagatgcgcatgctccag
gaggcggtggacaccctctttgataacgggcgtcggggccggccggtgaccgggcccaac
cgccggccgcttaagagcctttcggacatgcttcggggcaagcagggccgttttcggcag
aacctcctgggtaagcgggtggacttttccgggcgttcggtgatcgtggccgggccggag
ctgcggatgcatcagtgcggactgcccaagaagatggctctggagctcttcaagcctttt
atctatcactggctggaaaagaagggctacgccaccacgatcaagaccgccaagcgccta
gtggaggaggaagatcccctggtctgggatgccctggaggagatcgtcaaggaattcccg
gtgatgctcaatcgggctcccacccttcatcggctggggatccaggcttttgagccggtg
ctcatcgactccaaggccattcagctccatcctctggtttgcgtggcctataatgcggac
ttcgacggggaccagatggcggtccacgtgcccctttcggtagaggcccagaccgaatgc
cgggtgctccttctttccaccaataatattttgcttccggcaagcggggttccggtggtc
taccccacgcaggacatggttctgggactcttttacatgaccatggagcggccctttgcc
cggggagagggccgggcctttcgcaatcgggaagaagcccttctggcctatcaagagggg
gcggtggacctccaggcgcggatcaaggtgcgtctagacggaaagctggtggagaccact
ccgggacgcctgatcgtctccaccattgtgccggaagagattccctttgaggagtacaac
aagcctttgcgcaagaaagagctccagcgtctgatcgacctctcctaccggcgggccggg
gccaagaagacggtgatttttgccgaccgcatcaaggatctgggttatcagatggccacc
gaggccggactttccatctgtgtggactatctggtgatccccaagaagaaggccgagatc
ctggccgaggcagaaaagaaggtggaggagatccggcggcagtaccaggaggggctcatt
accgacggggagcgctataacaagacggtggatatctggtcggcggccacggagaaggtc
acccaggagatggtcaaggagatggagacggcggagtacgtggggcccaacggggagaag
gtggtagggcccagcatgaacccggtttacataatggcctactccggggcccggggctcc
atcgaccagatccgccagctggccgggatgcgcggccttatggccaaaccctcgggagag
atcatcgagacccccattaagagcaactttcgggagggcctttccgtcctggaatacttt
gtctccactcacggagcccggaaggggctggccgacacggctctcaagaccgccaatgcc
gggtatctcacccgtcgtctggtggatgtggcccaggatgtgaccatcgtggaggaagac
tgcgggaccatcgacgggattgaagtggggcacctcattgaggccggagagatcatggag
ccggtgtgggaccgggtgttgggtcgggtggccctggaggacgttgtggacccggtgacc
ggggaggtgctggtcaaggccaacgaggagatcgacgaggaggcggtaaaacgtctgcgg
gaggccggaatcgagaaagtggccatccgttcggtccttacctgtcagagccgttacgga
gtttgcgccaagtgttacggaagggatctagccaccgggcgcatggtggaaatcggggag
gccgtagggatcatcgccgcgcagtccattggcgagcccgggacccagctcaccatgcgg
accttccacatcggaggtacggccagccgggccgtggagcagagtgagcatcgggcccag
acccagggtcaggtgaaatttatcaatctgcgcacggtgcgggcccgggacggctctctg
gtggccctcaaccgtcagggagagatcgccattgtggccccggatggacgggagaaggaa
cgttacccggtggtttacggggccaagatccgggtaaaagagggacaggaggtcaagccc
ggggatctcttggtggagtgggatccctttactaatcccattatcacggaggtctccgga
aaggtaaaattcggagacatcattgacggggtcaccgtggacgagcgcaccgaccccatc
accggccgggtgagcattatcgtgcgggagtataagctcaccgactatcgcccgcggatt
tccattaaggacgagcgggggcggaccaaaaaattgccctccggccggggggaggcccgg
tatctccttccggtgggggccatccttaccgtgcaggagggcgactatgtggaggctgga
gacgtgatcgccaagatcccgcgggagacggtgaagaccaaggacatcaccggtggtctt
ccccgggtggccgagctctttgaggcccgaaagcccaaggactacgcggtgatcagcgag
atcgacggcgaggtcctctttgacaaggagctcaagggcaagcgcaagatcgtggtcaag
ccggaggtgggggaacccaaggagtatctcattcccaaggggaaatatctggcggtgcag
gagggggattacattcgggccggagaccccctgatcgagggctcccccaatcctcacgac
attctgcgggtcaagggggtcaaggagctggccaaattcctggtggaggagatccaggag
gtctatcggctccagggggtgcggatcaacgacaaacactttgaggtcatcgtgcgccag
atgctcaagaaggtgaagatcaaagaggtgggggacacgcgttttatgatcggggagctg
gtggaccgccacgtttttgaggaggaaaacgagcgcgtcctgcggcagggagggcgtccg
gcggtggccgaaccggtggtcctgggaattaccaaggccgccctctacaccgagagctgg
ctgtctgcggcctccttccaggagaccacccgagtgcttacggacgctgcgctggcgggt
aaggtggactacctgcggggcctcaaggagaacatgatcatcgggcgtctcattcccgca
ggcaccggccgggtctattacgacatgcgggccgaacaaaaggccctggaaaaggaaaag
aaggccgaactggagctacccttctaa
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