Thermosulfurimonas marina: FVE67_06685
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Entry
FVE67_06685 CDS
T06536
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmai
Thermosulfurimonas marina
Pathway
tmai03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FVE67_06685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmai03400
]
FVE67_06685 (mfd)
Enzymes [BR:
tmai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FVE67_06685 (mfd)
DNA repair and recombination proteins [BR:
tmai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FVE67_06685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
AAA_22
SNF2-rel_dom
RecG_dom3_C
UB2H
AAA_16
Cas3-like_C_2
SAF
AAA_30
SecA_DEAD
DUF3638
IGF2_C
Motif
Other DBs
NCBI-ProteinID:
QJA06502
UniProt:
A0A6H1WTI5
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All DBs
Position
1278133..1281579
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AA seq
1148 aa
AA seq
DB search
MELPKRLEALRKLLAEGRGVLEVGGVHPAALALVLASFSLEKPLLLLFPEEDPARRFVRA
FNFFSGSLPEIFPAPETPPLSEVLPSPETASQRMAVLAGLLLGRTRMVVTSVAALLRRLP
PPETLREAYEYLLCGEEIPRERLRERLVSLGYERVGRVEGVGEFAVRGGVIDLWPPGYEN
PLRLDFFGDQLETLRTFDPRTQRGLKPLEEAYIFPARETFVTGDPEALYERLLLRAERHR
VPSREVEALREALSLKRFLEPEEFWLPVLFERLVDFRAYLPPETVLVIWEPEQVQAQAES
FWGRVLSGARRAKRRLLFEPEEVFLPPEEWKDLLEKTFEGRLLARELPVAEKGITLSLRP
PETLLPPGDQSRGLSRGLLLVREALKSGDHVVLALSAPTSAERVRELLFEEGLVKEKPPV
REAPFREPERSLPLELYVGDLPEGLWWPELALILLSEAELFGKRRPEVARRPRLPGIRLE
DLKPGDYVVHREHGIGIYRGLVRLEVGGVPGEFLLVEYAGGDRLYLPVDRLGEIHRYVGV
DERPPALDRLGGKGFARRKEKVRRAIQEIAQELVALYAARRVARGHAFSPPDLVFREFEA
AFPYQETPDQEAAIEEVLADMQSPRPMDRLLAGDVGYGKTEVALRAAMLAVRDGKQVAVL
VPTTVLAEQHYRTFRERLSPFGVRVGVLSRLRPPAEQRQTLKALAAGEIQVVIGTHRLLS
TDVRFRDLGLLIVDEEHRFGVRHKERLKELKKTVDVLSLSATPIPRTLQMSLLGIRDLSV
IETPPPGRLPVKTILAKMEPEIVEEAIRRELARGGQVFFVYPRVKGLAALAGWVRRLVPE
ARVALAHGQMPPRQLEEVMGRFVRGEIDVLVCTTIIESGLDIPSANTIIICRADRLGLAE
IYQLRGRVGRGPVQAYAYLLVPSLSGLTEEARKRLRALMQFTELGSGFRLALSDLKIRGA
GNLLGTSQSGHIAAVGYDLYLEILESAIRELKGEKVEEVPEPEVRLNLPAYFPESYVPDV
EERLHLYRELSLVKDEEDLARFEEALKDRFGEPPAEGGHLLALTRLKIFLRALRILKLEA
RGAELIFHLGHDPAYYEPGIRALSREFRHLRLTREGRLRVKVEGPLLFQALKISQILREK
ILQDQKKE
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
gtggagcttccgaaaaggcttgaggccctgcgcaaactcctggccgagggccggggtgtc
ctcgaagtgggtggggtgcatcctgcggccctggccctggtcctggcctctttttctcta
gaaaaaccccttcttctcctttttccggaggaagacccggctcgccgtttcgtgcgggcc
tttaactttttctctggaagccttccggagatctttcccgccccggagactccacccctt
tccgaggtcctgccttctccggagacggcctcccagcgtatggcggtcctggccgggctc
cttctgggccgaacccggatggtggtgacctctgtggccgccctcctgcggcgactcccc
cctccggagaccctgcgggaggcctacgagtatcttctttgtggggaggaaatcccgcgg
gagcgcttgcgggagagattggtgtccttgggttatgaaagggtgggccgggtggagggg
gtgggagagtttgccgtgcgcggaggagtaatcgatctctggcctccgggctatgaaaat
cccctaaggctggattttttcggagaccaactggagaccctccgcacctttgacccccga
acgcagagggggctcaagcccttggaagaggcctatatctttccggccagagaaaccttt
gtgaccggagatccggaggccctttatgaaaggcttcttttgcgggccgagcgccatcgg
gtgccctcccgggaggtggaggccttgcgcgaggccctttctctcaagcgtttcctcgag
ccggaagagttctggctcccggtgctctttgaaaggctagtggattttcgggcctatctt
cccccggaaacggtgttggtaatctgggagcccgagcaagtccaggcccaggccgaaagc
ttctggggccgagtgctctccggggcccggagggccaagcgccggctcctttttgagccc
gaagaggtctttttgcctccggaggaatggaaggacctcctcgagaagacctttgaagga
cgattactggctcgggagcttccggtggccgaaaagggaatcaccctttcccttcgcccc
ccggagacccttcttcctcctggagaccaatctcggggactttctcggggtctgcttctg
gtccgggaggccttaaagagcggagaccacgtggtgctcgccctttctgcaccgacctcg
gccgagcgtgtgcgggagctcctctttgaggagggactggtgaaagaaaaacctccggtg
cgggaggcccctttccgagaaccggagcgctcccttcccctggaactctatgtgggggat
ctcccggagggcctttggtggccggagttggccctgatccttctttcggaggccgaactt
tttggaaagcgccgtccggaggtggcccgccggccacggcttcccggaatccgcctggaa
gatctcaaacccggagactatgtggttcatcgggagcacgggatcgggatctatcgggga
ctggtgcgtctggaagtgggcggagtcccgggagagtttttgttggtggagtatgccgga
ggggatcggctctatcttcccgtggatcgcctgggggagatccatcgctatgtgggggtg
gatgaaagacctccggcgctcgatcgcctgggaggcaagggatttgcccgccggaaggag
aaggtccggcgggccatccaggagattgcccaggaactggtggccctctatgcggcccga
cgggtggcccgagggcacgccttctctcccccggatctggtcttccgagagtttgaggcc
gccttcccctaccaggaaactccggaccaggaagcggctatcgaggaggtcctggcagac
atgcagagccctcggcctatggatcgcctgctggccggggatgtgggctacgggaagacc
gaggtagccctgcgggcggccatgcttgccgtacgagacggcaaacaggtagcggtcctg
gtccccaccaccgtgctggccgaacagcattatcgcaccttccgcgaaaggctctcccct
tttggagtacgggtaggggtgctttcccggctgaggcctccggccgagcaaaggcaaacc
cttaaggccctggctgcgggggagatccaggtggtcatcggcacccatcgcctgctttcc
accgatgtgcgttttcgggatctaggactgcttatcgtggacgaagaacaccgcttcggg
gtgcgccacaaggaacgcctgaaggaactcaagaagaccgtggacgtactttccctttcg
gctacccccatcccccgcactctgcagatgtcccttctggggatccgggatctttcggtg
atcgagaccccccctcccgggcgacttccggtaaagaccatcctggccaagatggaaccg
gagatcgtggaggaggccataagacgggagttggcccgaggcgggcaggtcttttttgtc
tatcctcgggtaaagggccttgcggccctggccggatgggtgcgtcggctggttccggag
gcccgagtggccctggcccacggacagatgcccccccgccagctggaagaggtcatgggc
cgctttgtgcggggggagatcgatgtcctggtctgcaccaccatcatcgaaagcggtctg
gatatcccttcagccaacaccattatcatctgccgggccgatcgtctgggactggccgag
atctatcaactccggggtcgggtgggccggggtcctgtccaggcctacgcttaccttctg
gtcccttcgctttcagggcttacggaggaggcccgcaaacgcctgcgggccctcatgcag
tttacggaactgggctcgggtttccggctggccttaagcgatctcaagatccgcggggca
ggcaatcttctggggacctcccagtccggccatatcgccgccgtgggctatgatctctac
ctggaaatcctggagagtgccatccgggaactcaagggagaaaaggtggaggaggtcccg
gagccggaggtgcgcctcaatctcccggcctacttccccgaaagttatgttccggacgtg
gaggagcggttgcacctttaccgggagctttccctggtgaaagatgaggaagatctggcc
cgttttgaagaggcccttaaggaccgttttggggagcctccggccgagggaggccatctc
ctggccctcacccggctgaagatctttttgcgggccctgaggatcctcaagctggaggcc
cggggggcggaactgatcttccatctgggccacgatcccgcttattatgagccggggatc
agggccctttcccgagaatttcgtcacctgcgccttacccgggaagggcgcctccgggta
aaggtggagggcccgcttcttttccaggcccttaaaatttcccaaatcctcagagaaaag
attttacaagaccaaaaaaaagaataa
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