Tenacibaculum maritimum: MARIT_0199
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Entry
MARIT_0199 CDS
T05240
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tmar
Tenacibaculum maritimum
Pathway
tmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MARIT_0199 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmar03019
]
MARIT_0199 (rhlE)
Enzymes [BR:
tmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MARIT_0199 (rhlE)
Messenger RNA biogenesis [BR:
tmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MARIT_0199 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
UvrD-helicase
NAD_binding_3
StiP
AAA_22
ERCC3_RAD25_C
CobA_CobO_BtuR
Motif
Other DBs
NCBI-ProteinID:
SFZ80109
UniProt:
A0A2H1E615
LinkDB
All DBs
Position
complement(199021..200316)
Genome browser
AA seq
431 aa
AA seq
DB search
MTFKSLGLTEELLKAVKEKGYTTPSPIQGKAIPIILDRKDVLASAQTGTGKTAGFTLPIL
QIITETKNPKYRPIKALILTPTRELAAQIYDNVRDYSKYLNIKSTAIFGGVKPKSQIATL
KGGIDILVATPGRLIDLHNQKALSLKRVDILILDEADRMLDMGFIRDIKKVINFLPKKRQ
NLLFSATFSKEIKELAKSILKAPVLVEAAPENTAAEMVIQKIYRVPKSKKAAMVSQLISE
GNWNQVLIFTRTKHGANKLTEKLLKKNISAAAIHGNKSQGARTKALKGFKENSIRVLVAT
DIAARGLDIPLLPHVINYELPNIAEDYVHRIGRTGRAGASGEAISLVSDEELEYAKNIEK
LLGKKLDISKLKNFDINELETKKIPKEKSFKAKKHNNSKSNSSPKRATKSTTKPTKKSRQ
EDTPFPKKKEK
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgacgttcaaatcattaggcttaacagaagagctactaaaagcagttaaagaaaaagga
tatacaactccatctccgatacaaggaaaagcaattccaataatattagatagaaaagac
gtattagcttccgcgcaaacaggaacgggcaaaactgctggctttactttgccaatatta
caaatcataactgaaactaaaaaccctaaatataggcctataaaagccttaattttaaca
cctactagagaattagctgctcaaatttatgataatgtcagagactatagtaaatatctt
aacatcaaatctactgcaatatttggaggcgtaaagcctaagtctcaaatagctacttta
aaaggagggatagatatattagtagccacccctggaaggttaatcgatttacataatcaa
aaggcactatcactcaaaagagttgatattttaattttggatgaagccgatagaatgcta
gacatgggatttattagagatataaaaaaagtcatcaatttcttacctaaaaagcgacaa
aatctattattctctgctaccttttctaaagaaattaaagaattagcaaaaagcatttta
aaggcccctgtacttgttgaagctgctcctgaaaacaccgctgccgaaatggtaattcaa
aaaatttatagagttcctaaaagtaagaaagcagccatggtatcacaacttatctctgag
gggaattggaaccaagttttaatttttacaagaacaaagcatggtgctaataaactcaca
gaaaagcttcttaaaaaaaatatttccgctgctgcaatacatggaaataaaagtcaagga
gctagaacaaaagccttgaaaggctttaaagaaaatagcattcgcgtattggtagccact
gatattgcagcacgtggtttagacattcctttactacctcacgttattaattatgaacta
cctaatatagctgaagattatgtacaccgaataggaagaacaggaagagctggcgctagc
ggagaggctatttctttagtttctgacgaagaactagaatatgctaaaaatattgaaaaa
ctactaggtaaaaaattagatataagcaaattaaaaaacttcgatatcaatgaattagaa
actaaaaagattcctaaagaaaaaagcttcaaagctaaaaaacataacaactcaaaaagc
aattcttctcctaaaagagccactaaaagcacaaccaagcctacaaaaaaatctaggcaa
gaagacacaccttttcctaaaaagaaagaaaagtaa
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