Thioflavicoccus mobilis: Thimo_0531
Help
Entry
Thimo_0531 CDS
T02397
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
tmb
Thioflavicoccus mobilis
Pathway
tmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thimo_0531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmb03019
]
Thimo_0531
03009 Ribosome biogenesis [BR:
tmb03009
]
Thimo_0531
Enzymes [BR:
tmb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Thimo_0531
Messenger RNA biogenesis [BR:
tmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Thimo_0531
Ribosome biogenesis [BR:
tmb03009
]
Prokaryotic type
rRNA processing factors
Thimo_0531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AGA89383
UniProt:
L0GRJ1
LinkDB
All DBs
Position
complement(567853..571137)
Genome browser
AA seq
1094 aa
AA seq
DB search
MKRMLINATQPEELRVATVDGQQLYNLDIESPGREQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIARAYFEPDSVKPGARINIKDAVKEGREVVVQIDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGVSRRIEGEDRTELRATMSQLQIPEDMGLIVRTAGVGKNVEE
LQWDLDYLLQLWQAIEKSADERSAPFLIYQESDVIIRSIRDYLRVDIGEIVIDDRKMYEK
AEQFMRQVMPGNLKKLRLYEDEVPLFTRYQIESQIESVFQRAVQLPSGGSIVIDHTEALT
SVDINSARATKGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPAKNQREVE
NRLREALKQDRARVQVARISRFGLLEMSRQRLRPSLGESSQLVCPRCRGQGTIRSVESLA
LSILRIIEEEAMKDNTQRILAHLPIDVATFLLNEKRRAILDIEERQGVEVLLLPSKELDT
PDYNIERVRSQDAAKQPKEQASYVYAAALAATATAARAAEVVRAEEPAVKHIVPTAPAPQ
RADPEPRPKASAYPRASGRPSPLAGESPPEPLSERHPEPLLKRIWTSIFVPRPAPGEEGA
PPEQDTHHATPAEERATPEPAPQPTRGGEPRQGGKDGERNGTRQGEGREGPNSDSDRSRN
SERRSRGRGRRSGGESSRRNGADGANDSGASPRPGTHPEQGKPTRESRGPSGEKARAKEP
EGGHDTPPATKGKALMLATTADSAAEQAATKDATATQPSPAEEAPALTTPPSDGSKPRSS
RRRRGGRGRRRSAAQREAAGNETSRTQDAGGEASGEHPAGDASPKQGQATEAAPPAAAEP
SSSSPAATTHAKEPGPKPAKTDKDQQATKADHAGKRATSDPSSSSGPGTEPPPIRDLAAK
GEEAERTPGPASSAPKAEAPETQRSAPTTETKVEREDHKGKPRIEDTPTAPIAKSVEADA
GARPRPEPTAPPQAPAQPTRTSHDADRGRPPQAVEGVSPPTSSEAPAQQPSARPQTGNSD
APQPAPVAPKPPPPADTRKTDERPPTAPQVETKAEAPPKPPATAPEDAKEDKEKKGGGDA
TPRPDPSNGDPGAD
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgatcaatgccacgcagcccgaagagctgcgtgtcgcgaccgtagat
ggtcaacagctctacaacctcgacatcgaatcccccggccgcgaacagaagaaggccaac
atctacaaaggcaagatcacccgcgtcgagccgagcctcgaggcggcgttcgtcgactac
ggcgccgagcgccacggcttcctgccgctcaaggagatcgcccgcgcctatttcgaaccc
gacagcgtcaagcccggcgcgcggatcaacatcaaggacgcggtcaaggaaggccgcgag
gtcgtcgtgcagatcgacaaggaggagcgcggtaacaagggcgcggcgctcaccaccttc
atctcgctcgccgggcgctacctggtgctgatgcccaacaacccgcgcgccggtggcgta
tcgcgacgcatcgagggcgaggaccgcaccgagctgcgcgccacgatgagtcagctccaa
atccccgaggacatggggctgatcgtgcgcaccgcgggggtcggcaagaacgtcgaagag
ctccagtgggacctcgactacctcctccagctctggcaggccatcgagaagtcggccgac
gagcgctcggcacccttcctgatttatcaggagagcgacgtcatcatccgctcgatccgc
gactacctgcgcgtcgacatcggcgagatcgtcatcgacgaccgcaagatgtacgagaag
gccgagcagttcatgcgccaggtcatgcccggcaacctgaaaaagctgcgcctctacgag
gacgaggtgccgctgttcacccgctaccagatcgagagccagatcgaatcggtcttccag
cgcgcggtccagctgccctcgggcggctcgatcgtcatcgaccacaccgaggcgctaacg
tcggtcgacatcaactcggcgcgcgccaccaagggcgccgacatcgaggagacggccctc
aacacgaacctggaggcggccgacgagatcgcccgtcagctgcgcctgcgcgacctcggc
ggcctcttcgtcatcgacttcatcgacatgaccccggcgaagaaccagcgcgaggtcgag
aaccgcctgcgcgaggccctcaagcaggatcgcgcccgcgtccaggtggcgcggatctcg
cgctttggcctgctggagatgtcacgccagcgcctgcgaccctcactcggcgagtcgagc
cagctcgtctgcccccgctgccgcggtcagggcacgatccgcagcgtcgagtccctggcc
ctctcgatcctgcggatcatcgaagaggaggcgatgaaggacaacacccagcgcatcctc
gcccacctgccgatcgacgtcgccaccttcctcctcaacgagaagcggcgggccattctc
gacatcgaagaacgccagggcgtcgaggtcctcctgctaccgagcaaggagctcgatacg
cccgactacaatatcgaacgcgtccgctcgcaggacgccgccaagcagcccaaagagcag
gccagctatgtctacgccgcggcgctcgcggcaaccgcgaccgcggcccgggcggccgag
gtcgtccgcgccgaggagccggcagtcaaacacatcgtgccgacggcgccagcgccacaa
cgcgccgaccccgagccgcggcccaaggcgagcgcctatccacgcgccagcggccgtccc
tcgccgctggccggtgaatcaccaccggagccactgtcagagcggcatcccgagcccctg
ctcaagcgcatctggaccagcatcttcgtgccgcgccccgcacccggcgaagaaggcgca
ccaccagagcaggacacccaccacgcgacccccgccgaggaacgggcgacgcccgagcca
gcgccccagccgacacgtgggggcgagccccggcagggcggcaaagacggtgagcggaat
ggcacgcgccagggtgaagggcgcgagggacccaacagcgacagcgatcgctcacgcaac
agcgaacggcgctcgcgcggccgcgggcggcgctcgggcggcgagagttcacggcgcaat
ggggccgacggcgcaaacgatagcggcgcgtcaccacgcccgggcacccaccccgagcaa
ggcaaaccgactcgcgagtcgcgcgggccgagtggcgagaaggcgcgtgctaaggaaccc
gagggcggccacgacacgccgccagccacgaagggcaaggcgctgatgctggccaccacg
gccgattcggctgctgagcaagcggcgacgaaggacgcgaccgcgacccagccgagcccg
gccgaggaggcccccgccctgaccacgcccccgagcgatgggagcaagcctcgctccagc
cggcgccgacgcggcggccgcggccgacggcgcagcgccgcccagcgcgaggcagccggc
aacgagacctcgcgcacccaagacgccggcggggaagcctcgggcgagcacccagctggg
gacgcttcaccgaagcaggggcaagcaaccgaggccgcgccacctgcggccgcagagccc
tcatcgagcagccctgcggcgacgacacacgccaaggaacccggaccgaaacctgccaag
accgacaaggaccaacaggccacaaaggccgaccacgccggcaaacgagcgaccagcgac
ccatcgagctcgagcggcccaggcaccgagccacctccgatccgcgacttggcggcgaag
ggtgaagaggcggagcgcacacccggtccggcgtcatcggcgccgaaggccgaggcaccc
gagacgcaacgcagcgcgccgacgaccgagaccaaggtcgagcgcgaagaccacaagggc
aaaccgcgcatcgaggacacccccaccgccccaatcgccaagtccgtcgaagcggatgcc
ggagcacgaccacggcccgagccgaccgctccaccccaggcacccgcccagccgacacgg
acctcgcacgacgcggacagggggcgcccaccgcaggctgtcgaaggtgtctccccgccg
acttcgagcgaggcacccgcgcaacaaccttcggcgaggccccagacgggcaactcggat
gcgccccagccggcacccgtggcgccgaaaccgccgcccccagccgatacgcgcaagaca
gacgagcgaccgccgaccgcgccgcaggtcgagaccaaggccgaagcaccgccgaagccg
cccgccaccgctccagaggatgcaaaggaagacaaggagaaaaagggcggcggcgacgcg
acaccccgacccgatccgagcaacggcgacccaggcgccgactga
DBGET
integrated database retrieval system
