Thioflavicoccus mobilis: Thimo_1819
Help
Entry
Thimo_1819 CDS
T02397
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
tmb
Thioflavicoccus mobilis
Pathway
tmb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thimo_1819
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmb03400
]
Thimo_1819
DNA repair and recombination proteins [BR:
tmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Thimo_1819
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Thimo_1819
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_22
AAA_30
UB2H
eIF3_p135
AAA_25
DUF87
Motif
Other DBs
NCBI-ProteinID:
AGA90588
UniProt:
L0GV15
LinkDB
All DBs
Position
2014487..2016532
Genome browser
AA seq
681 aa
AA seq
DB search
MIAKPPREQNPRPMEKALQLVTSFAPAGDQPEAIRRLVAGLEDGEVAQTLLGVTGSGKTF
TIANLIAQVQRPALILAPNKTLAAQLYGEMREFFRHNAVEYFVSYYDYYQPEAYVPSTDT
YIEKDASINEHIEQMRLSATKALLERPDVIIVATVSSIYGLGDPNAYLKMVLHLSRGDII
DQRALLRRLADLQYKRNEVELHRGTYRVRGDVIDIHPAESEEEALRVELFDDEIESLALF
DPLTGEVRRRVPRYTVFPKTHYATPRETILAAVEQIKVELKERLAWLRGNDKLVEAQRLE
QRTLFDLEMMLEVGYCSGIENYSRYLSGRGPGEPPPTLYDYLPADAIVVIDESHVTVPQL
GGMYRGDRSRKENLVEYGFRLPSALDNRPLRFEEFQARQLQTIYVSATPRSFELEHSGAV
VEQVVRPTGLVDPEVEVRPVLTQVDDLLSEIGLRVAADERVLVTTLTKRMAEDLTDYLGD
HGVRVRYLHSDIDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGF
LRSEGSLIQTIGRAARNANGKAILYADIITGSMRRAIDETERRRAKQIAHNLAHGITPQT
IRKAVADILEGALPGAPRSARAYAKVAEEVLEYASLTPQQMAKKIKALEKAMYRHAKDLE
FEEAAAIRDQIKTLQGRGLAA
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgatagctaaaccacctcgtgagcagaatccccgtccgatggaaaaggccttgcagctc
gtgacctcgtttgccccggccggcgatcagcccgaggcgatccgccgcctcgtcgccggg
ctcgaggacggcgaggtcgcacagacgctgctcggcgtgaccggctcggggaagaccttc
acgatcgccaacctgatcgcccaggtgcagcgcccggcactgatcctcgcgccgaacaag
acgctggccgcccagctctacggcgagatgcgcgagttctttcggcacaacgcggtcgaa
tatttcgtctcctactacgactactaccaacccgaggcctacgtcccctcgaccgacacc
tacatcgagaaggacgcctcgatcaacgagcacatcgagcagatgcgcctgtcggcgacc
aaggcgctgctcgagcgccccgacgtcatcatcgtcgcgaccgtctcgtcgatctacggc
ctaggcgatccgaacgcctatctgaagatggtgttgcacctctcgcgcggcgacatcatc
gaccagcgcgctctgctgcggcgcctcgccgacctccagtacaagcgtaacgaggtcgag
ctgcaccgcggcacctaccgggtgcgcggcgacgtcatcgacatccacccggccgagtcg
gaggaggaggccctgcgtgtcgagctcttcgacgacgagatcgagtccctggccctgttc
gacccgctgaccggcgaggtgcgtcgacgggtgccgcgctataccgtcttccccaagacc
cactatgcgacgccgcgcgagaccatcctcgccgccgtcgagcagatcaaggtcgagctc
aaggagcgcctcgcctggctgcgcgggaacgacaagctggtcgaggcccagcgcctggag
cagcgtacgctgttcgacctggagatgatgctcgaggtcggctactgctcggggatcgag
aactacagccgctacctgtcgggccgtggcccgggcgagccgccgccgaccctctacgac
tacctgccggccgacgccatcgtcgtcatcgacgagagtcacgtcactgtgccgcagctt
ggcggcatgtaccgcggcgaccgctcgcgcaaggagaacctggtcgagtacggcttcagg
ctgccgtcggccctcgacaaccggccgctgcgcttcgaagagttccaggcccgccagctc
cagaccatctatgtctcggccacgccgcgcagcttcgagctcgagcactccggcgccgtc
gtcgagcaggtcgtgcgcccgaccgggcttgtcgacccggaggtcgaggtgcgtccggta
ctcactcaggtcgacgacctgctctccgaaatcggcctacgcgtcgccgccgacgagcgg
gtgctggtgacgaccctgaccaagcgcatggccgaggacctaaccgactatctcggcgac
catggcgtgcgagtgcgctacctgcactcggacatcgacaccgtcgagcgggtcgagatc
atccgcgacctgcgcctcggcgagttcgacgtgctggttggcatcaatttgctacgcgag
gggctcgacatgccggaggtctcgctggtagcgatcctcgatgccgacaaggaaggcttc
ttgcgctccgagggctcactgatccagaccattggccgcgccgcacgcaacgccaacggc
aaggccatcctctacgccgatatcatcaccggctcgatgcgccgcgccatcgacgagacc
gaacggcgccgcgccaagcagatcgcccacaacctcgcccacgggattacgccgcagacg
atccgcaaggcggtcgccgacatcctggaaggcgcgctgcccggggcgcccaggtcggcg
cgcgcctacgccaaggtggccgaggaggtcctcgaatacgcgagcctgacgccgcagcag
atggcgaagaagatcaaggcgctggagaaggcgatgtaccgtcacgccaaggacctagag
ttcgaggaagccgctgcgatccgtgaccagatcaaaacgttgcagggccgcgggcttgcc
gcttga
DBGET
integrated database retrieval system
