Thioflavicoccus mobilis: Thimo_1953
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Entry
Thimo_1953 CDS
T02397
Name
(GenBank) exoribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
tmb
Thioflavicoccus mobilis
Brite
KEGG Orthology (KO) [BR:
tmb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tmb03016
]
Thimo_1953
Enzymes [BR:
tmb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Thimo_1953
Transfer RNA biogenesis [BR:
tmb03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Thimo_1953
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
RNase_II_C_S1
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
AGA90718
UniProt:
L0GVD4
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All DBs
Position
complement(2161295..2163118)
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AA seq
607 aa
AA seq
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MPHQQPTPRVDSLVLYKLYPARVVAIGEKIEIELEGGQKKRVRPKDIELLHPGPIRSLIE
LEPCDGEIDEAWSLLEGGETDLKELSELVFDDYSPASSWAVWQHVAAGVHFTGSPAAIRV
RSREEVERDRAEREAKAAAEADWREFLDRVRRAQPTVEDRERLVEVERLALAKGEHSRIL
KALGHQETPQNAHRALVDCGYWPSDYNPYPRRIGVVVEDPQLEVPSLPDEERLDLTHLAA
YAIDDEGNEDPDDALSLDGDILWVHVADVAALVSPDSEMEREARARGANLYLPEGVVNML
PSGVTARLGLGLQEVSPALSFGFRCSATGEPINLQVERTWVRVQRLTYEGVEERIDAPPF
AAIAAFLTPFRTRREARQAASIELPEVSVRVRDGGVEVRPLARLRSRALVTDAMLMAGEA
AAAFCREHEIPIPYACQPAPSSPETPTELSGMYAYRRKLKPTRLAREPEPHAGLGLPVYT
RTTSPLRRYSDLLVHHQLRAWLRGESPLTADAVMTRIAEADTAASLVRRAERLSNQHWKL
VFLRSQADWRGEGVIVEVDEHKCTVLVPDLAMETRVRLRGDATLNTRVRLALREVDLPEL
GAIFGSR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
ttgccgcatcagcaaccgacccccagggtggacagcctggtcctctacaagctctatccg
gcgcgggtggtcgcgatcggcgagaagatcgagatcgagctcgagggtggacagaagaaa
cgcgttcgaccgaaggatatcgagctgctccatccgggcccgatcaggagcctgatcgaa
ctcgagccttgtgacggcgagatcgatgaggcctggtcactgcttgagggtggcgagacc
gatctcaaggagctcagcgagctggtcttcgacgactattcgccggcgagcagttgggcc
gtctggcagcatgtcgcggccggcgtgcacttcaccggcagcccggcggcgattcgggtg
cgtagccgcgaggaggtcgagcgcgaccgcgccgagcgggaggcgaaggccgccgccgag
gccgattggcgggaattcttggaccgcgtgcggcgtgcgcagccaaccgttgaagaccgc
gagcgcctagtcgaagtcgagcggttggccctggcgaagggcgagcacagccgcatcctc
aaggccctcggccaccaggagacgccgcaaaatgcccaccgggcactcgtcgattgcggt
tattggccgtcggactacaacccctatccacggcgcatcggggtcgtggtcgaggatccg
cagctggaggtgccaagtctgccggacgaagagcgcctcgatctcacacatctcgcggca
tacgcgatcgatgacgaaggcaacgaggatccggacgacgccctgagcctcgacggcgat
attctctgggtccatgtcgccgacgtggccgcactggtttctcctgacagcgaaatggag
cgcgaggcccgggcgcgcggcgccaacctctatctgccggagggtgtcgtcaacatgctg
ccgagtggcgtgacggctcggcttgggctcggcctccaagaggtctcgccagccctttca
ttcggctttcgctgctcggccaccggcgagcccataaacctacaggtcgagcggacctgg
gtccgggtgcagcgcttgacctacgaaggcgtcgaagagcgcatcgacgcaccgccgttc
gccgccatcgcggccttcctcaccccttttcgtacccgtcgcgaagcccgacaggccgcc
agcatcgagttgccggaggtcagcgtgcgggtccgtgacggcggcgtcgaggtccgaccg
ctggcgcgcctacggagccgggcactggtcacagacgcgatgctgatggctggcgaggcg
gccgcggccttctgccgtgagcacgagatcccgatcccctacgcctgccagccggcaccg
agcagcccggaaacgcctacggaactgtccggtatgtacgcctatcgccgcaagctcaag
ccgacacggctcgcgcgcgaaccggaaccccatgccggactcgggctgccggtctatacc
cgcacgaccagccccctgcggcgctattccgatctcctcgttcaccatcagctgcgagcc
tggctgcgcggcgagagtccgctgacggccgacgccgtgatgacgcgcatcgccgaggcg
gatacggccgcgtccctggtacgtcgcgccgagcgtctatcgaatcagcactggaagctc
gtctttttacggtcccaagcggactggcggggggaaggggtcatcgtcgaggtcgacgaa
cacaaatgcacggtcctggtcccggacctggccatggaaacgcgggtgcggttgcggggg
gacgcaacgctgaacacccgcgtgcgactcgcgctacgcgaggtcgatctgccagagctc
ggcgcgatcttcggttcgcgttag
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