Thioflavicoccus mobilis: Thimo_2134
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Entry
Thimo_2134 CDS
T02397
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tmb
Thioflavicoccus mobilis
Pathway
tmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thimo_2134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmb03019
]
Thimo_2134
03009 Ribosome biogenesis [BR:
tmb03009
]
Thimo_2134
Enzymes [BR:
tmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Thimo_2134
Messenger RNA biogenesis [BR:
tmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thimo_2134
Ribosome biogenesis [BR:
tmb03009
]
Prokaryotic type
rRNA helicases
Thimo_2134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_30
CMS1
Motif
Other DBs
NCBI-ProteinID:
AGA90885
UniProt:
L0GZT1
LinkDB
All DBs
Position
complement(2356985..2358874)
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AA seq
629 aa
AA seq
DB search
MRASRAARYPRGCRFYMDSLDVPADFSRLGLAPAVLQAVQALGYETPTGIQAQCIPHLLA
GRDLLGQAQTGTGKTAAFALPVLSRISVEEARPQVLVLTPTRELALQVAEAFQSYAQCLR
GFHVLPLYGGQSYGLQIRQLGRGPHVIVGTPGRIMDHLRRGTLSLDGIRTLVLDEADEML
NMGFAEDIDWIFAQAPAERQVALFSATMPPAIRRVAQTHLREPVEIKVAARSETVDTIEQ
HHCLVTRYHKLDLLTRVLEIQPFDAILIFVRTKTETVELAERLCAHGFAAEALNGDMNQV
MRERTVERFRDGRLDILVATDVAARGLDVERVNLVVNYDIPNDPAAYVHRIGRTGRAGRA
GRAVLFVEPRERGLLRAIERTIRQSVPAMDIPSAEAVSESRIGRFTEDLRTALADQDMDF
FYRLVGRIAHEQELEVMDIAAALAYLVQRERPLVVAEVPQPRIDADRRGRRDRPDRAGRD
PRAGHGPRERRGPRETQNGDAGLVAYRIEVGRRDGVGPREIVGAIANEAGIDGRQIGRIA
IRDDHSLVDLPAEMPRALVQQLQRVYVCGKALQLHPAERGARGPERDDWRGGGNDRFGQQ
GRPEGRGAGKGGRPGRFAGDRPPRSKRFG
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcctcccgggccgcccgctacccccgaggttgccgtttttacatggattcgcta
gacgtacccgccgatttctcgcggctcgggctcgcccccgccgtgctccaggccgtgcaa
gcgctcggctacgagaccccgactgggattcaagcccagtgcatcccccacctcctggcc
gggcgggacctgctcggtcaggcccagacgggaaccggcaaaacggctgcattcgcgctg
ccggtgctgagccgcatctcggtcgaggaggcgcgcccgcaggtgctggtgttgaccccg
acccgcgaactcgcgctccaggtggccgaggccttccagtcctatgcccaatgcctgcgc
ggcttccacgtcctgcccctttacggcgggcagagctacgggttgcagatccgtcagctc
gggcgcgggccgcacgtcatcgtcggcacgccggggcgcatcatggaccatttgcgccgc
ggtaccctctcgctcgatggcattcgcaccctggtcctcgacgaggccgacgagatgctc
aacatgggcttcgccgaggacatcgattggatcttcgcgcaggccccggccgaacgccag
gtggccctgttctcggcgaccatgccgccggccattcggcgagtcgcccagacgcatctg
cgcgagccggtcgagatcaaggtggccgctcgctccgagacggtcgacacgatcgagcag
catcattgcctggtgacccgttaccacaagctcgatctgctgactcgggtgctcgagatc
caaccattcgacgcgatcctgatcttcgttcgcaccaaaaccgagacggtcgagctggcc
gagcggctctgcgcccacggcttcgccgccgaggcactcaacggtgacatgaaccaggtg
atgcgtgagcgcaccgtcgagcgattccgcgacgggcggctcgacatcctggtggcgacc
gatgtggccgcgcgcgggctcgacgtcgagcgggtcaatctcgtcgtcaactacgatatc
ccgaacgaccccgcggcctacgtgcaccggatcggtcgcactggacgggccgggcgggcc
gggcgcgcggtgctcttcgtcgaaccgcgcgagcgcggcctgctgcgggcgatcgagcgg
acgatccgtcaatcggtgccggcgatggacatcccgtcggccgaggcggtcagcgagtcg
cggatcggacgtttcaccgaggatctgcgcacggccctcgccgaccaggacatggacttc
ttctaccgcttggtcggccggatcgcccacgagcaggagctggaggtcatggatatcgct
gcggcactggcctatctggtccaacgtgagcggccgctggtcgtcgccgaggtcccccag
ccgcgcatcgacgccgaccgtcgcggtcggcgcgacagacccgaccgggcgggccgcgac
ccgcgtgccggccatggtccacgcgagcggcgcggcccgcgcgagacccaaaacggggat
gccggcctggtcgcctaccgcatcgaggtcgggcgccgtgacggcgtcggcccgcgcgag
atcgtcggggccatcgccaacgaggccgggatcgacgggcgtcagatcggtcgcatcgcc
attcgcgacgaccattcgctggtcgacctgccggccgagatgccgcgtgccctcgtgcag
cagctccagcgcgtctacgtctgcggcaaggccttgcagttgcaccccgccgagcggggg
gcacgcgggccggaacgtgacgactggcgagggggcggcaacgaccgctttggccaacag
ggtcgtccggagggtaggggggccggcaagggcggacgtcccgggcggttcgccggcgat
cgcccgccgcgctcgaagcgcttcggctga
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