Thioflavicoccus mobilis: Thimo_2365
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Entry
Thimo_2365 CDS
T02397
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmb
Thioflavicoccus mobilis
Pathway
tmb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Thimo_2365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmb03400
]
Thimo_2365
Enzymes [BR:
tmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thimo_2365
DNA repair and recombination proteins [BR:
tmb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Thimo_2365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
DUF7267
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AGA91101
UniProt:
L0GYR5
LinkDB
All DBs
Position
2624367..2627888
Genome browser
AA seq
1173 aa
AA seq
DB search
MSSAHLDVDDPTLHTAIAPPLPERPGARLQWGGLHGASPALAVASAAADADRLLLVVVED
VQAAARLRGELAFFLGDDAQGETPAEAAIPVLAFPDWETLPYDVFSPLPELVSERLATLH
RLPDLRRGILVVPVATLLQRLAPRTYLDAHSLVLAVGERLDLEATRRRLESAGYQCVSQV
IAHGEFAVRGSLFDVFPMGSEVPYRIDLFDDEVESLRTFDPDSQRSLEKVQEIRLLPARE
LPLTDEAISAFRQRYRAAVEGDPKRSLIYREVSESRVPGGIEYYLPLFFDEIASLFDYLP
DAVLTIEADGCREAAARFLAEVAERYEQRRYDIERPPLPPARLYLGADELAARLNRMSGV
RYRELAIAERAKGYSALCHFATRTLPPLAIQPRATHPAQALQAFVEPPGRRVLFVAESNG
RREMLADHLRGFGLKPRPVAGWADFVEAEAPLGLTVAPLEQGLWLTDRDLAIVTETQLYG
ERVRQERRRRNRERDDETVVRNLTELTEGAPVVHEDHGVGRYLGLQTLTVGGLTTEFLAL
EYARGDKLYVPVSSLHLISRYTGASPEQAPLHRLGGDQWERIKRRAAEKAHDVAAELLDI
YARRAARAGIAFPASEAEYAAFAAAFPFEETPDQARAIESVVADMADKKPMDRVVCGDVG
FGKTEVAMRAAFVAVQGGRQVAVLVPTTLLAQQHFENFSDRFADWPIRIESLSRFRTAKE
QKRILDGLADGTLDIVIGTHKLLQGTVKFKNLGLAIIDEEHRFGVRHKEALKALRAEVDV
LTLTATPIPRTLNMAMSGLRDLSIIATPPVERHPIKTFVAPWNDVLVREACLRELKRGGQ
VYFLHNEVESIENQAQKLIELVPEARIEIAHGQMRERELERVMRDFYHQRFNLLVCTTII
ESGIDVPSANTIVINRADKLGLAQLHQLRGRVGRSHHRAYAYLITPPPQAMTEDAKKRLE
AIESLEDLGAGFTLATHDLEIRGAGELLGDEQSGQIHEVGFSLYMDLLEQAVQTLKAGRT
PDLDRPLDHGAEIDLQLPALLPADYLPDVHARLVLYKRIASAASRAELDELQVEMIDRFG
LLPEPAKNLFAITTLKLRIQPYGIRKVEAGASSGRILFSPETRIDPARLVALLQRHPHTF
KLDGGDKLRFYRDMAEPQERLAQVEAVLAQIID
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgcccacctcgacgtcgacgacccgacgttgcacaccgccatcgccccaccg
ctgccggaacgtcccggcgcccgtctccaatggggagggctccacggggccagcccggcc
ctggcggtcgcctcggcggccgccgatgccgaccgcctgctgctggtcgtcgtcgaggac
gtgcaggccgcggcacgcctgcgtggcgaactcgcgttctttctcggcgacgacgcccag
ggcgagacgcccgcagaggcggcaatcccggtcctcgccttcccggactgggagaccctg
ccctacgacgtcttctcgccgctgccggagctcgtctccgaacggctcgcgaccctgcac
cgcctcccggacctgcgccgcggcatactggtggttccggtcgccaccctgctccagcgg
ctcgcgccgcggacctacctcgacgcccattccctggtgctcgccgtcggcgagcggctc
gacctcgaggcgacccgccggcgcctggaaagtgccggttaccaatgcgtctcccaggtc
atcgcgcacggcgaattcgcggtgcgcggctcgctgttcgacgtcttcccgatgggcagc
gaggtgccctaccgcatcgacctcttcgacgacgaggtcgagagcctgcgcaccttcgac
cccgacagccagcgctcgttggagaaggtccaggaaatccggctgctgccggcccgcgag
ttgccgctcaccgacgaagcgatcagcgcctttcgccagcgctaccgggcggcggtcgag
ggcgaccccaagcgcagtctgatctatcgcgaggtctccgagtcgcgggtgccgggcggc
atcgagtactacctgccgttgttcttcgacgagatcgcgagcctgttcgactacctgccc
gatgcggtcctgacgatcgaggccgacggctgccgcgaggccgccgcgcgcttcctcgcc
gaggtcgccgagcgttacgagcagcgccgctacgacatcgaacgcccgccgctgccgccg
gcgcggctctacctgggcgccgacgagctggccgcgcggctcaaccgcatgagcggtgta
cgctaccgggagctggcgatcgcggagcgggccaagggctacagcgccctgtgccacttc
gcgacccgcacgctgccaccgctcgcgatccagccgcgcgcgacgcatcccgcccaagcc
ttgcaggcgttcgtcgaacccccggggcgacgggtcctgttcgtcgccgagagcaacggg
cggcgcgagatgctcgccgatcacctgcgcggcttcgggctgaagccgcgcccggtcgcc
ggctgggccgacttcgtcgaggcagaggcgccgctcggcctcacggtcgcaccgctcgag
cagggcctgtggctcaccgaccgcgacctcgccatcgtcaccgagacccagctctacggc
gagcgggtgcgccaggagcggcgccgacgcaaccgcgagcgcgacgatgaaacggtcgtt
cgcaacctcacggagctgaccgaaggcgccccggtggtccacgaggaccacggcgtcggc
cgctacctggggctccagaccttgaccgtcggcggcctgacgaccgagttcctcgccctc
gaatacgcccgcggcgacaagctctacgtgcccgtctcgtcgctgcacctgatctcgcgc
tacacgggcgcctcgcccgagcaggcgccgctgcaccgcctcggcggcgaccagtgggag
cggatcaagcgccgcgccgccgagaaggcccacgatgtcgccgccgagctgctcgacatc
tacgcccggcgcgccgcgcgtgccggcatcgccttccccgcgagcgaggcggaatatgcg
gccttcgccgccgccttcccgttcgaggagaccccggaccaggcccgggcgatcgagtcg
gtggtcgccgacatggccgacaagaagccgatggaccgggtggtctgcggcgatgtcggc
ttcggcaagaccgaggtcgcgatgcgcgccgccttcgtcgccgtccagggcggccgccag
gtcgccgtgctcgtgccgacgacgctcctcgcccaacagcacttcgagaacttctccgac
cgcttcgccgactggccgatccgcatcgagagcctgtcgcgcttccgcaccgcgaaggag
cagaagcgcatcctcgatggcctggccgacggcacgctcgacatcgtcatcggcacccac
aagctcctgcaaggcaccgtcaagttcaagaacctcgggctcgcgatcatcgacgaggag
caccgcttcggcgtgcgccacaaggaggcgctcaaggccctgcgcgccgaggtcgatgtc
ctgacgctgaccgcaaccccgatcccgcgcacgctgaacatggccatgtcggggctgcgc
gacctctcgatcatcgccacgccaccggtcgagcgccacccgatcaagaccttcgtcgcg
ccctggaacgacgtcctggtgcgcgaggcctgcctgcgcgagctcaagcgcggcggccag
gtctacttcctgcacaacgaggtcgagtcgatcgagaaccaggcccagaagctcatcgag
ctggtccccgaggcgcgcatcgagatcgcccacggccagatgcgcgagcgcgagctggag
cgggtcatgcgcgacttctaccaccagcgcttcaacctgctggtctgcacgaccatcatc
gagagcggcatcgacgtgccgagcgccaacaccatcgtcatcaaccgcgccgacaagctt
ggcctcgcccagctccaccagctgcgcgggcgggtcgggcgctcccaccatcgcgcctac
gcctacctgatcacgccgccgccccaggcgatgaccgaggatgcgaagaagcgcctcgag
gcgatcgagtcgctggaagatctcggcgccggcttcacgctcgcgacccatgacctcgag
atccgcggcgccggcgagctgctcggcgacgagcagagcggccagatccacgaggtcggc
ttctcgctctacatggacctcctcgagcaggccgtgcagacgctcaaggccgggcgcacg
cccgatttggatcggccgctcgaccacggcgccgagatcgatctccagctaccggcgctg
ctgcctgccgattacctgcccgacgtgcacgcccgcctcgtgctctacaagcggatcgcg
agcgccgcgagccgcgccgagctcgacgaactccaggtcgagatgatcgaccgcttcggc
ctgctgcccgagccggccaagaacctgttcgcgatcacgacgctgaagctgcgcatccaa
ccctacgggatccgcaaggtcgaggccggggcgagcagtggacgcatcctgttctcgccg
gagacccggatcgacccggcccgcctcgtcgccctcctccagcgccacccccacaccttc
aagctcgatggcggcgacaagctgcgcttctaccgcgacatggccgaaccgcaggaacgg
ctcgcccaggtcgaggccgtcctcgcccagatcatcgattga
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integrated database retrieval system
