Thioflavicoccus mobilis: Thimo_3098
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Entry
Thimo_3098 CDS
T02397
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tmb
Thioflavicoccus mobilis
Pathway
tmb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Thimo_3098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmb03019
]
Thimo_3098
03400 DNA repair and recombination proteins [BR:
tmb03400
]
Thimo_3098
Enzymes [BR:
tmb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Thimo_3098
Messenger RNA biogenesis [BR:
tmb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Thimo_3098
DNA repair and recombination proteins [BR:
tmb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Thimo_3098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
ResIII
GerE
Motif
Other DBs
NCBI-ProteinID:
AGA91782
UniProt:
L0H146
LinkDB
All DBs
Position
3396610..3398760
Genome browser
AA seq
716 aa
AA seq
DB search
MARSPLDILHSVFGYHGFRGQQETIIEHVVNGSDALVLMPTGGGKSLCYQIPALVRPGAG
IVISPLIALMHDQVEALRQNGVRAAYLNSTLTLDEARATEQALTDGELDLLYMAPERLLT
ERTLRLLGRARLSLFAIDEAHCVSQWGHDFRPEYTQLDLLAERFAGIPRLALTATADEPT
RRDIRIGLRLEQARAFVDGFDRPNIRYRIGQFPDARGALLRLIEEEHPQDAGIVYCLSRR
KVEALATWLQDRGVKALPYHAGLPSETRRRHHQERFLREDGVVIVATIAFGMGIDKPDVR
FVAHLDLPKSIEAYYQETGRAGRDGLPATAWMAYGLQGVLTLRQMLEASNAEERHKAIER
RKLEAMLGLCEITSCRRQALLYYFGDRLEAPCGNCDNCLEPPATWDATLAAQQAMSAIYR
TGQRFGVNYLIDVLRGSDSTRIRDFGHDRLKVYGLGQDLAATRWRSVFRQLVARGLVSVD
VEGHGSLRLTDAARPVLRGDETLSLRQDPESKKQRRAARQAPSGEADRPLWEALRTKRRE
LAAEQGVAPYMVFHDAVLMQMVELRPRDLTQFARLDGVGERKLAQYGADFLTVLRAHDSP
PSEPIDPGETTRATLALWRRGLDVEAIATERELSIRTVQDHLAQLIGAGALVLTDVLRLP
TAELERIRDALLATASEGRTPLRPAYERLDGDHDWPVLRYVAADLERRIAGDSAAP
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgatccccgctcgacatcctacattccgtcttcggctaccatggctttcgtggt
cagcaagagacgatcatcgagcacgtggtcaatggcagcgacgccctcgtgctgatgccg
accggcggcggcaaatccctttgttatcagatcccggccctggtgcgtccgggcgccggc
atcgtcatctcgccgctgatcgcgctgatgcacgaccaggtcgaggccctgcggcagaac
ggcgtgcgcgccgcctacctgaactcgaccctgaccctcgacgaggcgcgcgcgaccgag
caggcgctaacggatggcgaactcgatctcctctatatggcgcccgagcgactcctcacc
gagcgcacgctgaggctcctcggccgtgcccgcctcagcctgttcgcgatcgacgaggcg
cattgcgtctcccaatgggggcacgacttccgccccgaatatacccagctcgacctgctg
gccgagcgcttcgccggtatcccgcgcctcgccctgaccgccaccgccgacgagccaacc
cgccgcgacatccgcatcggacttcggctggagcaggcccgcgccttcgtcgacggcttc
gaccggcccaacatccgctaccgtatcggccaattcccggatgcccgtggtgccctgctt
cgactgatcgaggaggagcatccacaggatgcgggcatcgtctactgcctgtcgcggcgc
aaggtggaggcactcgccacctggcttcaggaccgcggagtcaaggcgctgccctatcac
gccggcctgccgtccgaaacccgccgccgccaccaccaggagcgcttcctgcgcgaagac
ggcgtcgtcatcgtcgcgacgatcgccttcggcatgggcatcgacaagcccgatgtgcgt
ttcgtcgcccacctcgacctgcccaagagcatcgaggcctactaccaggagaccggccgg
gccggccgtgacgggctgccagcgacggcctggatggcctacgggctccagggcgtgctg
accctgcgccagatgctcgaggcctcgaacgccgaggagcgccacaaggcgatcgaacgc
cgcaaactggaggccatgctcggcctctgcgagatcaccagctgccggcgccaggcgctc
ctgtactacttcggcgaccgcctggaggcaccctgcggcaattgcgacaactgcctggaa
ccgccggcgacctgggatgcgacgctcgccgcgcaacaggccatgtcggccatctaccgc
accggccagcgcttcggcgtcaattacctgatcgacgtcctgcgcggctcggacagcacc
cgcatccgcgatttcggccatgatcgactcaaggtctacggtctcggccaggatctcgcc
gcaacgcgctggcgctcggtctttcgccaactggtcgcgcgcggactggtgagcgtcgac
gtcgaaggacacggttcgctacgcctcacggacgcggcccgcccagtgctgcgcggcgat
gagacgctgagcctgcggcaggaccccgaatccaagaagcagcgtcgcgccgcgcggcaa
gcaccttccggcgaggccgaccgcccgctctgggaggccttgcggaccaaacgccgcgaa
ctcgccgccgagcaaggggtggcgccctacatggtcttccacgatgcggtgctgatgcag
atggtcgagctgcgtccacgcgacctcacccagttcgcccgcctcgacggcgtcggcgag
cgcaagctcgcgcagtacggcgcggacttcctcaccgtgctgcgcgcacatgattcgccg
cccagcgaacccatcgacccgggtgaaaccacccgcgccacgctcgcgctctggcgccga
gggctggacgtcgaggccatcgccacggagcgggaattgagtatcagaaccgtccaagac
cacctcgcccaactgattggtgccggcgcactggtcctgaccgacgtgctgcgattgccg
acagccgagctggagcgcatccgcgacgctctgcttgccaccgccagcgagggtcgcaca
ccacttcgcccggcctacgagcgactcgacggcgaccacgactggcccgtgctgcgctat
gtggcggccgatctcgaacggcggatcgccggcgactcggcggcaccctga
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