Thalassovita mediterranea: KUV46_13030
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Entry
KUV46_13030 CDS
T07443
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmd
Thalassovita mediterranea
Pathway
tmd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KUV46_13030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmd03400
]
KUV46_13030 (mfd)
Enzymes [BR:
tmd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KUV46_13030 (mfd)
DNA repair and recombination proteins [BR:
tmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KUV46_13030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
RecG_dom3_C
AAA_30
AAA_16
SecA_DEAD
UB2H
Peripla_BP_5
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QYJ00252
LinkDB
All DBs
Position
complement(2667117..2670563)
Genome browser
AA seq
1148 aa
AA seq
DB search
MPSPSRLTSLSAPTNVSGAPFGLDIKAFQDSLLNKGGIALYVARDDKTAATALKLAEFFH
PTMDRVLLPGWDMLPYDRVSPSAAVASQRCAALARIAQQREGSKPLLVITTGSSLIQRLP
PRETMRAASFSMSVGEELAEDALTDYLSVNGYIRASTVSERGEYAIRGGIIDIYPPTSDE
PIRLDLFGDTLDQLKAFNPETQISTRELPSITLAPVSEILFSSDTLSLFREKYLDAFGAP
GGDTMYEAARAQIRRQGLENWLPLFHDHLDSLFDYIGSDALIGFGYLAGEASSERRSQAE
DYHAARLEAATEDRPSRVLPPDALYLSNRELDEELSARGIARFSAAGAETGIDLGGKHGR
DFAPERAQPETNVFKSAAAHAQALRERGLTVIFGAWTSGSADRLVNVMDDHGLGALPRVY
SMEAAVTAGLSICELPLEQGIETESLAIISEPDVLGDRLAAPRRKRKAANFISEAASLNT
GDLVVHVDHGVGRYAGLKTLELTGAPHDCLELEYSGGDKIFLPVENVDLISRYGSDDAES
AVDKLGGVGWQTRKAKAKKRILEMAAELLEIAAARELKKAEPTTTGQGLYEEFAARFPYE
ETDDQLNAIEDTLEDLASGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGMQVAVIAPTTL
LARQHFKSFAERFANWPVKVRHLSRMVTQKEANDAREGLTSGDVDIVVGTHALLSKSIEF
KRLGLLIVDEEQRFGVKHKERLKELKSDVHVLTLSATPIPRTLQMALTGIRDLSIIATPP
VDRLSVRTYVAEFDTVTIREALLREKYRGGQAFFVAPRISDLDFLETFMRDNVPEVSFIV
AHGQMPPTELEDIMTAFYEGEYDVLLSTTIVESGLDIPRANTLVIYRSDMFGLAQLYQLR
GRVGRSKLRAYAYLTTPREHVMTPGAERRLRILQSLDSLGAGFQLASHDLDMRGSGNLLG
DQQSGHVKEVGVELYQSMLEDAVNALKSGSDLEEEVADDWSPQINLGVAVLIPEDYVEDL
GVRLGLYRRLAEIDTDEGRERFAAELIDRFGPLPEETKQLLDITAIKAACKKLGIGKLDS
GPKGIVMAFREDTPVEPRELMTIVQSRPNSMKLRPDGKLVVTRAPDEKEKRIQLIRNLLR
ELSALTPA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgcccagcccttcgcgcctcaccagcctgtctgcgccgacgaacgtctcaggcgcgccc
ttcggactggatatcaaagcctttcaggactccctcctgaacaagggcggcatcgcgctc
tacgtcgcgcgggatgacaagaccgcagcgaccgccctcaagctcgccgaattctttcac
ccgacaatggaccgcgtccttctgccgggctgggacatgcttccctatgaccgggtcagc
ccgagcgccgctgtggcgtcccagcgttgcgccgcgctcgcgcgcattgcgcagcaacgc
gaaggcagcaagccgcttctggtcatcaccacaggctcatccctgatccagcgcctgcca
ccccgcgaaacaatgcgcgcggccagcttctccatgagtgtcggcgaagaactcgcagag
gacgccctcaccgactacctgtccgtcaacggctatatccgcgcctcgacggtgagtgag
cggggcgagtacgccattcgcggcggcatcatcgatatctatccgccgaccagcgatgaa
ccgatccggctcgacctgtttggcgatacgctggaccagctgaaagcctttaatccggaa
acccagatttcaacgcgcgagctgccatcgatcacgcttgcacccgtctccgagattctc
ttctccagcgacacgctcagcctgtttcgcgagaaataccttgatgccttcggcgcgcca
ggcggcgacacgatgtatgaggccgcgcgggctcagatcaggcggcagggtctcgaaaac
tggctcccgctcttccacgaccatctcgacagcctgttcgattatatcggcagcgatgcc
cttatcggctttggctatctggcgggcgaggcctcaagtgagcgccgctcacaggccgaa
gactatcacgccgcccggctcgaagcggccaccgaggaccgcccctcgcgcgtcctcccg
ccggacgcactctatctgagcaatcgagagctcgacgaagagctttccgcacgcggcatc
gcccgcttctctgccgcaggcgccgaaaccggcatcgacctcggcggtaagcacggccgc
gacttcgcaccagaacgcgcgcagccagagacgaacgtcttcaaatcggccgccgcccat
gcgcaagccctgcgtgaaagaggcctgaccgttatcttcggggcgtggacgtccggctct
gccgaccggctcgtcaatgtcatggatgatcacgggctcggcgcattgccgcgggtctat
tccatggaagcggcggtcacggctggcctcagcatctgtgaattgccgctagagcagggg
atcgagaccgaatctctcgccatcatctcagaacccgacgtgctcggtgaccggctggca
gccccgcgccgcaagcgcaaggccgcgaacttcatttccgaggcggcctccctcaataca
ggcgacctcgtcgtgcacgtcgatcatggtgttggccgttatgccggcctcaagacactc
gagctgaccggcgcgccgcatgactgcctggagctcgaatattccggcggcgacaagatc
ttcctgccggtcgagaacgtcgaccttatcagccgctatggcagcgatgacgccgaaagc
gccgtcgacaagctgggcggtgtcggctggcagacccgcaaggcgaaagccaagaagcgc
atcctcgaaatggcggcagagctgctggagatcgccgccgcgcgcgaactcaagaaggcc
gaaccaacgacaacagggcagggactctacgaagagttcgccgcccgcttcccttacgaa
gagacagacgaccagctcaacgccatcgaggatacgctcgaagacctcgccagcggcaag
ccgatggaccgcctggtctgcggcgatgtcggcttcggcaagactgaagttgcccttcgc
gccgccttcgtggccgcaatgagcggtatgcaggtcgccgtcatcgcgccgaccacactg
ctcgcgcgccagcacttcaaatccttcgccgaacgcttcgccaattggccggtcaaagtc
cgacacctgtcgcgcatggtcacgcaaaaggaagcgaacgacgcccgcgagggcctcacc
agcggcgatgtcgacatcgtcgtcggcacccatgcactcctgtcaaagtcgatcgagttc
aagcgtctcggccttctcatcgtcgatgaggagcaacgctttggcgtgaagcacaaggag
cggctgaaagaactgaaatcggacgtccacgtcctgacgctttcggcaacgccgatcccg
cgcaccctccagatggcgctcaccggcatccgcgatctttccatcatcgcgaccccgccc
gtcgaccgcctgtctgtgcgcacctatgtcgccgagttcgacaccgtcacgatccgtgag
gcgctgctgcgtgagaagtatcgcggcggtcaggccttcttcgtcgccccgcgtatctct
gacctcgatttcctcgaaaccttcatgcgcgacaacgtgccggaggtgagcttcatcgtc
gctcacgggcagatgccaccaacagagctcgaagacatcatgaccgccttctatgagggc
gagtatgacgtgctgctctcgaccacgatcgtcgaaagcgggctcgacattccgcgcgcc
aatacgctcgtcatctatcgctccgacatgttcggcctggcgcagctctaccagcttcgt
ggacgcgtcggccggtccaagcttcgtgcctatgcctacctcaccacgccgcgtgagcat
gtgatgacgccaggcgccgagcgccgcctgcgcatcctgcaatcgctcgacagccttggc
gcaggcttccagcttgcgagccacgacctcgacatgcgcggctctggtaacctcctcggc
gaccagcagtccggccacgtcaaggaagtcggcgtcgaactctaccagtccatgctggaa
gacgcggtcaacgccctcaaatccggcagcgacctcgaagaagaagtcgcagacgactgg
tcaccgcagatcaatcttggcgtcgcggttcttatcccggaagactatgtcgaggaccta
ggcgttcgcctcggcctctaccgccgccttgctgagatcgacaccgatgaaggccgtgag
cgtttcgccgccgagcttatcgaccggttcggcccgctccctgaagagaccaagcagctc
ctcgacatcaccgccatcaaggcggcctgtaagaagcttggcatcggcaagctcgattcc
ggcccgaagggcatcgtcatggccttccgcgaagatacgcccgtggagccgcgcgagctg
atgaccatcgtccagtcgcgcccgaattccatgaagcttcgcccggatggcaagctggtc
gtcacccgcgcgccggacgagaaggaaaagcgcatccagctcatccgcaacctgcttcgt
gagctcagcgccctgacacccgcctga
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