Thalassovita mediterranea: KUV46_13780
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Entry
KUV46_13780 CDS
T07443
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tmd
Thalassovita mediterranea
Pathway
tmd03410
Base excision repair
tmd03430
Mismatch repair
tmd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tmd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KUV46_13780 (recJ)
03430 Mismatch repair
KUV46_13780 (recJ)
03440 Homologous recombination
KUV46_13780 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmd03400
]
KUV46_13780 (recJ)
DNA repair and recombination proteins [BR:
tmd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
KUV46_13780 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
KUV46_13780 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KUV46_13780 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
QYJ00392
LinkDB
All DBs
Position
complement(2818907..2820694)
Genome browser
AA seq
595 aa
AA seq
DB search
MMPGGGYLFNVGQSLGDRYWSLADVDDNKVRQLSLSLGTPDFISRLLFLRGVEAGAAPGF
LAPKLRDTFPDPSTFKDMEKAARLIMDAIADGRNVTVFADYDVDGGTSSALLARYFRAWG
RELGLYVPDRLTEGYGPSPAAFRYLKEQGADLVITVDCGAAATEALEEANRIGLPVIVID
HHLMGHEWPEVAALVNPNRPDDTSGYGHLAAAGVVYVMLAALNAEARKRNIAPAGGLPNM
LDWLDLCALGTLCDMSPLRDANRAFVHQGLKIMARDGNPGLRALADVAGIGRIESVYHAT
FVLGPRLNAGGRVGDPWLAAKLLATDDRQEAIELAERLHGLNDERKAVEAHILEIATAQA
ERQLEQDPDRHALVVSGEDWHPGVIGIVAGRIKDRFHRPTIVIGWGRELGPVAKGSARSV
RGVNIGDAIAQAAREGHILSGGGHAMAGGLSLEPDQIGPFSDWLNTHLSAFSDERDAARE
LKVDALLDAGAVSPDTFDLIAQLGPFGQGAPEPYFALTDMEITHARPIGANHLRLTAEST
TGRVEVLSWRSVGTPLGDALQARGRFHLVGRLKCDEWNGRRRAQLELVDAAPTGG
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
gtgatgccgggcggcggctacctgttcaatgtcggtcagtcgctcggcgatcgatactgg
tcgctcgccgacgtcgacgacaacaaggtccggcagctgagcctttcgcttggcacgccg
gactttatttccagactgctttttcttcgaggcgtagaagcgggcgcagcgccgggattt
ctggcgccgaagcttcgtgacacatttccggacccctccaccttcaaggatatggagaag
gcggcgcgtcttattatggacgcgatcgcagatggccggaacgttactgtctttgctgat
tatgacgtcgatggcggcacctcatcggccctgcttgcccggtactttcgcgcctggggg
cgagagcttggcctctacgtcccggatcgcctgacggaaggctatggcccgtctccagct
gcctttcgctatctgaaagaacagggcgccgacctcgtcatcacggttgattgtggggct
gcggcgacggaagcgcttgaagaagccaaccgcattggcttgccggtcatcgtcatcgac
caccacctgatggggcatgaatggccggaagtggccgcgctggtaaatcccaatcggccg
gatgacacatccggctatggccacctcgcggcggctggcgtggtctatgtcatgctcgca
gctctgaacgcagaagcgcgcaagcggaatatcgcgcctgctggcggcctgcccaacatg
ctcgactggctcgacctttgtgcccttggcacgctttgcgacatgtcgcctttgcgcgat
gccaaccgcgcctttgtccatcaggggctgaagatcatggcccgtgacggaaatccgggg
ctccgcgcgctggcagacgttgccgggatcggccggattgaaagcgtgtatcatgcgacc
ttcgttcttgggccccgcctcaatgcaggcggccgggtcggtgacccgtggcttgcggca
aagctgctcgcgacagatgaccgtcaggaagcgattgaactcgcagagcggcttcatggt
ctgaatgatgagcgaaaggccgtagaggcccatattctagaaatcgcaacggcacaggca
gaacgtcagctggagcaggatcctgaccgtcatgccctcgtcgtatctggcgaagattgg
catcccggcgtcatcggcatcgtggcagggcgaatcaaggaccgcttccaccggccaaca
atcgtgatcggctggggcagggagcttggtccagtcgccaagggatcggcgaggtctgta
cgcggtgtgaatatcggggacgcgatcgcccaggctgcacgcgaagggcatattctctca
ggcggtggtcatgcgatggctggcggcctcagccttgagccagaccagatcgggccgttc
tccgactggcttaatacccatctcagcgccttttcagatgaacgggatgcggcgcgggaa
ctgaaagtcgacgccttgctggacgcgggtgctgtgtcgcctgacacttttgatctcatc
gcgcagctcggcccgttcgggcaaggcgcacctgaaccatattttgcgctgacggatatg
gagatcacgcatgcgcggcccatcggtgccaatcatctgcgcctgacagctgagagcacg
acagggcgagtcgaagtgctgagctggcgcagtgtcggcacgccgctgggcgatgcgctg
caggcgcgagggcgctttcatctggtcggacgcctgaaatgtgacgagtggaatggccgc
cgccgcgcgcaactggaactcgtggatgctgcgccaacaggcggttaa
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integrated database retrieval system
