Thermosipho melanesiensis: Tmel_0367
Help
Entry
Tmel_0367 CDS
T00550
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tme
Thermosipho melanesiensis
Pathway
tme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tmel_0367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tme03019
]
Tmel_0367
03400 DNA repair and recombination proteins [BR:
tme03400
]
Tmel_0367
Enzymes [BR:
tme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Tmel_0367
Messenger RNA biogenesis [BR:
tme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tmel_0367
DNA repair and recombination proteins [BR:
tme03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Tmel_0367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Pribosyltran
Cas3-like_C_2
RTT107_BRCT_6
UPRTase
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-ProteinID:
ABR30236
UniProt:
A6LJY5
LinkDB
All DBs
Position
complement(380603..384073)
Genome browser
AA seq
1156 aa
AA seq
DB search
MYNKNTTLNIILYYYAIWGDFVFKIEQCYFDNSTNLNNIVFDNFEYSSAIDNFKFFALKT
YFPRNKFRDEDIEFEDRVFRNIVYEFKKGNKEISEKMASVFVKLLKNVNVKKPVICAIPA
SNFVDTEKRFKYFTKTLSKKLNFENGFSYIQNKKNRRNKHFEKFQGNIIEYISINKKKIK
GKTILLFDDIITTGNSFITIANKLVEFGAENVIGVFLGKTYDFQTKKKIQKNTYYDKAAY
IFDESMKITGFSYEIKTFNISKNKVVDNNFILTAKIVNNIIMRGIPTFASKYLFENTKDN
YKAILSAWLHRVIIFSIVNGILTEENLNIAIIERDISFSHIAIKDLYLYMENISKLLEYT
FPKFNVKIFNNPENKFNNFDLVIDIGFKKRQPLTIGAPYIFIQQTEMDNTLPRFYNFKPI
KFFKANESNKEKENALKFILQNVFFKEEFREGQLKIIKRILSLNDTIGLLPTGGGKSLCY
QLSGLLQPGIIIVIDPIKSLMVDQVDNLEKLGINSCAYLNSDLERSKRDKILKKLEDGNY
KFLFIAPERLQIKDFRKSLSALSEKTTIPFIVIDEAHCVSEWGHDFRPSYLNISKNIRLI
TQKNNYKPKILALTGTASYAVLNDIQKELEIFSNSAKIYPKSFDRKELHFIIYKTSNKEK
ILKKILLTNLPKKFGKNNIAGIIFSSTVDGENGTEHISTILKSLGIHHLTYSGKVPKKSR
LSEKEHAQKNLKTQKKFKENKVSLLVATKAFGMGIDKPNIRYTIHYTLPSSLEAFYQEAG
RAGRDRNPAFCYLIFTEKDENITNAVLDISKSADYAIKLYNEQMKDIKDDVTTQVFFHKS
SFVGENEESEKVINFLEKVFPTLQKYKNVYITVSLEGRSKIIFEKILHRLSILGVVKDYT
VKYDTQITFEIKMELLSENNVYKNLFNYVTRYSLGENEFKVQKSPYSDLKSSYKFYIKTL
VKFIYSEIEKQRRRALFALIEMARHAKGENEIKKYILNYFEETTFSRELWKLYKELDFET
LFKLLTVIQTKKVEKIKNLYGNILRFLESAPDNPSFYLLTAFIRTRLIYSQDREEEMIAT
DVESIKKDWENFLRNFNFKKYENELIFIFERFLEITHQRTLKNEIFYLIFEKTNSKKFVE
KFQFIDETRYFSKRIL
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtataataaaaatacaacacttaatattatactatattattatgctatatggggggat
tttgtgtttaaaatagaacaatgttattttgataactccacaaatttaaacaatattgtc
tttgataattttgaatacagtagtgcaatagataactttaaattctttgcattaaagacc
tactttccaagaaataaatttcgcgatgaagacatagagtttgaggatagggtttttaga
aatattgtatatgagttcaaaaaaggaaataaagaaatctctgaaaaaatggcatctgtg
tttgtaaaacttttaaagaatgtgaatgtaaaaaaacctgtgatatgtgctattccagca
tctaattttgttgatacagaaaaaaggtttaaatattttacaaaaactctttcaaaaaaa
ctaaattttgaaaatggcttttcctacatccaaaataaaaaaaatagaagaaacaaacac
tttgaaaaattccaaggaaatattatagaatacatatccatcaacaagaaaaaaataaaa
ggcaaaactatactactttttgatgatatcataacaactggaaatagttttattaccata
gcaaataagcttgttgaatttggagcagaaaatgttattggtgtatttttaggaaaaaca
tacgactttcaaactaagaaaaaaatacaaaaaaatacctattatgataaagcagcctat
atttttgatgaaagtatgaaaataacaggtttttcatatgaaataaaaacgtttaatata
tcaaaaaataaagttgtggataataattttatactcacggcaaagatagttaataacata
ataatgagaggaattcccacatttgcctcaaaatatctttttgaaaacaccaaagataat
tataaagccattctttctgcatggttgcacagggtaattatattttccatagtaaacggt
atactaaccgaagaaaaccttaatattgcgattattgaaagagatatatccttttctcat
attgcaataaaggatttatacttatacatggaaaatatatcaaaacttcttgaatataca
tttcctaaattcaatgttaaaatttttaataatccagaaaacaaattcaataactttgac
ttagttattgatataggctttaaaaaaaggcaaccattgacaataggagcaccatacata
ttcatccaacaaactgaaatggataatacacttccaagattttacaactttaaaccgata
aaatttttcaaagcaaatgaaagcaacaaagaaaaagaaaatgccctaaaatttattctt
caaaacgtattttttaaagaagaatttagagaaggccaacttaagattataaaaagaatt
ctttctctaaacgatactattggacttttacctacaggtggtgggaagtctctttgctat
caattgagcggacttttacaacctggaataataattgtaatagaccctatcaaatcactt
atggttgatcaagtagacaatcttgaaaaattgggaattaattcttgtgcatatctaaat
agtgatcttgaacgttcaaaaagagataagatactaaaaaagcttgaagatggaaattat
aaattcttatttattgctcctgaaagattacaaataaaggatttcagaaaaagtctaagt
gcactttccgaaaaaactactattccttttattgtaatagatgaagcgcattgtgtttca
gaatggggtcatgattttaggccttcatatttaaacatttctaaaaatatcagacttatt
acacaaaaaaataattacaaaccaaaaatcttagctctaactgggaccgcatcatatgcg
gtattaaacgatattcaaaaggaattggaaatcttctctaatagtgcaaaaatatatccc
aagtcatttgatagaaaagaacttcattttataatctacaaaacatctaataaagaaaaa
atactaaaaaaaattctcttaacaaaccttccaaaaaaatttgggaaaaataatatagca
ggaattatcttttcatcaactgtagatggtgaaaacggaacggaacatatatccacaatt
ttaaaaagtcttggcattcaccatttaacatattctggaaaagtgccaaaaaaatcaagg
ttaagtgaaaaagaacatgcccaaaagaatttaaaaactcaaaagaagtttaaagaaaat
aaggtttctttacttgttgcgacaaaggcttttggaatgggtattgacaaaccaaatata
agatacaccatacactatacactaccttcgtcacttgaagcattttatcaggaagcagga
cgcgcaggaagagatagaaacccagcattttgctaccttatattcacagaaaaagatgaa
aatataacaaatgctgtattggatattagcaaaagtgcagactatgctattaaattatat
aatgaacaaatgaaagatataaaagatgatgtaacaacgcaagtattttttcacaaatct
tcatttgttggtgaaaatgaagaatcagagaaagtgattaattttttggaaaaagttttt
cccacattgcaaaaatataaaaatgtgtacataacagtttcactagaaggaaggagtaaa
atcatatttgaaaaaatattacataggttaagcattcttggtgttgttaaggactatacg
gtaaagtacgatacccaaataacatttgaaataaaaatggaacttttatccgaaaataac
gtatacaaaaatttatttaattacgttacaagatactcattaggtgaaaatgagtttaaa
gtgcaaaaaagtccatatagtgatttaaagtcatcgtataagttttacataaaaacactt
gtaaagttcatctattcagagattgaaaaacaaagacgaagagcactttttgccttaatt
gaaatggcaaggcatgcaaaaggcgagaatgaaataaaaaaatatatactaaattatttt
gaagaaaccacattttcaagagagctttggaaactgtataaagaacttgattttgaaact
ttgtttaaacttttaacggtaattcaaacaaaaaaagtagaaaaaattaaaaatctatat
ggaaacatattaaggtttcttgaaagtgccccagacaatccaagtttttacctattaaca
gcctttattcgaaccagattaatatatagtcaagacagagaagaagaaatgatcgcaacg
gatgtagaaagtataaaaaaagattgggaaaactttttgagaaactttaatttcaaaaaa
tatgaaaatgaattgatattcattttcgaaagatttttagaaattactcatcaaaggact
ttaaaaaatgaaattttttacctcattttcgaaaaaacaaactctaaaaaatttgtagaa
aaatttcaatttatagatgaaacaagatatttttccaaaagaatactttaa
DBGET
integrated database retrieval system
