Thermosipho melanesiensis: Tmel_0501
Help
Entry
Tmel_0501 CDS
T00550
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tme
Thermosipho melanesiensis
Pathway
tme03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tme00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Tmel_0501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tme03021
]
Tmel_0501
03400 DNA repair and recombination proteins [BR:
tme03400
]
Tmel_0501
Enzymes [BR:
tme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Tmel_0501
Transcription machinery [BR:
tme03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Tmel_0501
DNA repair and recombination proteins [BR:
tme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Tmel_0501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RnfC_N
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABR30368
UniProt:
A6LKB7
LinkDB
All DBs
Position
complement(528996..533945)
Genome browser
AA seq
1649 aa
AA seq
DB search
MMGSTFKRKISKVTVKVASPEVIRSWSSGEVKKPETINYRTFKPEKDGLFCEKIFGPTKD
YECACGKYKGKKYEGTVCERCGVRVESKEARRKRMGHIDLFAPVVHVWYLKSSPSILSSL
LGIQAKELENVIYYGGKRIIEKILIVTNPKDTDFIKGSLLYQTEYEIYNQKLDFEVMPGV
IIKSPVAPVISSISGEVKIRHEKTHTDREITWVDVRKISRAEHRVYNGMVLNVKNGDYVN
QGDEIVSEMQIDPIYAPFDGTVEIDEISNTITIKPLTTSKDMPVTFSLPYGVKPVVPNNS
KVKKGDQLTNGTVLPAVIASVSGNISFGKELNVRPLEDGKYEVLTSGSVYVENVVEEKHY
PLFEGAFVYVKDGDEISEGQTIADRFLFEDEYLTLDEYKIFEQHYPAMFTAESEVENDRP
IVVITEIDDEVSVETGLKIGDIITDHQYSAYRTLYNDKIEADSGASAIKKLLQKLDLEKL
KAEIESELKKVSKSSGRAKKLLRRLKIVKDLLKSETKPEWMILEAIPVVPPDIRPMIQVE
GGRFATTDLNDLYRRVINRNNRLKKLYEMNSPEIIIKNEKRMLQEAVDSLIYNGRMGKAV
TDRNGRALKSLTDLLKGKKGRFRRNLLGKRVDYSGRAVIVVGPHLKIHECGLPKKMAMEL
FKPFVLAELLNKDDETSKTARKMKKAIIEKEMPQAYEVLEEIIKGHPVLLNRAPTLHRMS
LQAFEPKLIEGNAIQLHPLVCPPFNADFDGDQMAVHVPLSAAAQAEAKFLMLSRYNIISP
AHGKPISMPGKDIVAGVYYLTMVGKDYDKVQKENIKWKFSSIDEAELAYEFGHIRLHDPI
LVKVDDRVIKTTYGRLVFANIVPREFRDYNKTYGKGAIKDLVYKTFKKYGVDRTADLLDD
IKDLGFHYATISGLTVSITDFYISPERRRIIDEAKKKISEVEELFALGFLSDEERYRETI
KIWADATEKVQDATFEYIGKDPFNPVYIMVDSGARGNKDQLKQLAGMRGLMADPSGRTIE
IPIISNFREGLSVLEFFISTHGARKGSADTALRTSSAGYLTRRLVDVAQSVVITTTDCGT
ENGVRATVLKSSDGLTVEKLEDFLFGRVLAKDVYDPKTNSVLVNPENGKEYTRDTMIDDD
DAKFLGNYSVRIPVSRELEINLTNPELPENYCELITDFIYDGVHYDEGTEVNWDIIRKAK
NSGLEKLTVKEYPIVGKVSVETVVSQKDIKQLVVDEELIMPTTAKILEGHNVESVQVRPE
IIVRSVLTCEAEHGVCSKCYGMDLSNHKIIGVGEAVGVVAAQSIGEPGTQLTMRTFHTGG
IATTADITQGLPRAEELFEARKKLKEPEGIFSRVKGYVKDIVEDETGKKKVYIEDEAGDI
HEYDIPTKVKVSVNKGQKILPGQSLSTGAIRPRKILETLDVDTTALYLLKEIKKVYVEQG
VDIHDKHFEIIIKQMLDKVEVIDPGDTDYLPGDLLRLQMVKRINKQILEENVHVETNRKR
VIGKILHQHLIAEDENGEIVEIAPEGVEVTEEILEKAIKSGIKEIIVKNGDGEIVTYQIL
PKEPIKYRRRLLRITKASLERVGWLSAASFQQTPQVLTEAAIEGSVDHLLGLKENVIVGQ
LIPAGTGLDMFANIQIEETPRLAQKEKMA
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atgatgggttcaacttttaagagaaaaatttctaaagttacggttaaagttgcctcgcca
gaagtaataagaagctggtcaagtggtgaggtcaaaaaacccgaaaccataaactataga
acctttaaaccagaaaaggatgggctattttgtgaaaagatatttggtcctacgaaagac
tacgaatgtgcttgtggaaagtataaaggaaagaagtatgaaggtacagtatgtgaaaga
tgtggagttagagtagaatcaaaagaagcaagaagaaaacgaatggggcatattgactta
tttgctcctgtggtccatgtttggtatttaaaaagtagtccaagtatactttcatcactt
cttggtattcaggcaaaagagttggagaatgtaatatattacggtggtaaaagaataata
gagaagatattgatagtaactaatcccaaagatacagatttcataaagggttcgttactt
tatcaaacagaatatgaaatatacaatcaaaaattggattttgaagttatgcctggagtt
attattaaatcacctgtagctcctgtaataagtagtatatctggtgaagtaaaaataaga
cacgaaaagacacatactgacagagaaattacttgggtagatgttagaaagatctcaaga
gcagagcatagggtatacaatggaatggttttgaatgtaaaaaatggggattatgtgaac
caaggtgatgagattgtttcggaaatgcaaattgacccaatttatgctccttttgatgga
acagttgagatagatgaaatatcgaataccattacaataaagcctttaacaacaagtaaa
gatatgccagttaccttctcgttgccatatggtgttaaacctgtagttcctaataatagc
aaggtaaaaaaaggtgatcaattaacaaatggaacagttttaccagctgtaatagcatct
gttagtgggaatataagctttggaaaggaacttaatgtaagacctctagaagatggaaag
tacgaggtattaacaagtggaagtgtgtatgtagaaaatgttgtggaggaaaagcattat
ccattatttgaaggggcatttgtttacgtaaaagatggtgatgaaatttcagaaggtcaa
acaatagcagatagatttttatttgaagatgagtatttaacacttgatgagtacaaaatt
ttcgagcaacattatcctgcaatgtttacagcagaatcggaagttgaaaatgatagaccc
atagtggtaatcacagaaattgatgatgaagtttctgttgagacagggctaaagataggt
gatataataactgatcaccaatatagtgcgtatagaacgctgtataatgataaaattgag
gcggattctggagcctctgctataaagaagcttttacaaaaattagatcttgaaaagttg
aaagcagaaatcgaatcagaattaaaaaaggtctctaaaagcagtggaagggcaaaaaaa
cttcttagaagattaaaaattgtaaaagatttgttaaagagcgaaacgaaacctgaatgg
atgatacttgaagctattccagttgttccacctgacattagaccgatgatacaggtcgaa
ggtggaaggtttgccactacagatttgaatgatttgtacagaagggttataaacagaaac
aacagattgaaaaaactttatgaaatgaattctccggagataattataaaaaacgaaaaa
aggatgctacaagaagcagtagatagtctaatatacaatggaagaatgggaaaagctgta
acggatagaaatggaagggcattaaaatcactaacagacctgcttaaaggtaaaaaagga
aggtttagaagaaatctacttggtaagcgtgtggactattctggacgtgctgtaatagtc
gttgggcctcatctaaagattcatgaatgtgggcttccaaagaaaatggctatggaatta
ttcaagccatttgtattggcggaactcttaaataaagatgatgaaacaagtaaaactgct
aggaagatgaaaaaggcaattattgaaaaggaaatgcctcaagcatatgaagtacttgaa
gaaataataaagggtcacccggtccttctaaatagggcacctacattgcataggatgtca
cttcaggcatttgaaccaaagttaattgaaggtaatgcaatacaacttcatccacttgtg
tgtccaccatttaacgcagactttgatggggaccaaatggctgttcatgtgccattgtct
gctgcagcacaggctgaggcaaaattcttgatgctttcaagatacaacataatttcacct
gcacatggaaaaccaatatctatgcctggtaaagatattgttgcaggtgtctattatctt
acaatggttggaaaagattatgataaggttcaaaaagaaaacataaaatggaaattttct
tccattgatgaagcagaacttgcatatgaatttggtcatataaggcttcacgatccaata
ttggtaaaagttgatgacagagttataaaaaccacatatggaagattagtatttgcaaat
atcgttccaagagaatttagagattataacaaaacttatggcaaaggcgcaataaaagac
ttagtatataagacgtttaagaaatacggtgttgatagaaccgctgatctattggatgat
ataaaagatttagggttccactatgctacgatatcagggcttacggtaagtataaccgat
ttttacatttccccagaaaggcgaagaataatagatgaagcaaagaagaagatatcagaa
gtagaagaattatttgcattaggatttctttccgatgaagaaagatacagagaaacaata
aagatttgggcagatgcaactgaaaaggtgcaagatgctacatttgaatacataggaaaa
gatccatttaacccagtgtatataatggtagattctggggcgaggggtaacaaagaccaa
cttaaacaacttgctggtatgcgtggtctaatggctgatccttctggaagaacaatcgag
attccaattatttcaaactttagagaagggctttctgttttggaattcttcattagtaca
cacggtgcaagaaaaggttctgcagatacagctcttagaacaagttctgctggttatttg
acaagaagacttgtagatgtggctcaatctgttgtaataactacaactgactgtggtact
gaaaacggagtaagggcaaccgtgttaaagagtagtgatggattaacagttgaaaagtta
gaagatttcttatttggtagggtccttgcaaaagatgtatacgatccaaaaacaaatagt
gtattagtaaatccagaaaatggtaaagaatacaccagagatacaatgatcgatgatgat
gatgcaaaattcttggggaattattccgttagaataccagtttcaagagagcttgaaatt
aatcttacaaatcctgaacttccggaaaattattgtgagttaattacagactttatttac
gatggtgtacattacgatgaaggaacagaagtgaattgggatataattagaaaggctaaa
aattcagggcttgaaaaattaacagtgaaagaatatccaattgtaggaaaagtttctgtg
gaaacagtggtaagtcaaaaagatataaaacaactagtagtagatgaggaattgataatg
ccaactactgcaaaaattttagaaggacataacgttgaatccgtacaggtaagaccagaa
attattgtaagatccgtgctcacgtgtgaagctgaacatggcgtttgttcaaagtgttac
ggaatggatctttccaaccataaaattataggtgtaggagaagctgttggtgttgttgcg
gcacaatcaataggtgaaccaggtactcaacttactatgagaacattccatacaggtggt
attgcaacaactgcagatatcacacaagggcttccaagagcggaagaactatttgaggca
aggaagaaattaaaagaacctgaaggtatattttcaagggtgaaaggatatgtaaaagat
atagtagaagatgaaacaggaaagaaaaaggtgtacatagaagatgaagcaggagacatc
cacgaatatgatataccaacaaaagtgaaggtttcagtaaataaagggcaaaaaatactt
cctggtcaatcgctatcaactggtgcaattagacctagaaagatacttgaaacactagat
gtggatacaacggcgttgtatctattgaaggaaatcaaaaaggtctatgtggaacagggt
gttgatattcacgataaacattttgagattataataaaacaaatgcttgacaaagtagaa
gtaatcgatccaggagatacagattacttaccaggagatcttttaaggcttcaaatggtt
aaaagaattaacaaacagattttagaagaaaatgtacacgttgaaacaaataggaaacgc
gtgattggaaaaatattacatcaacatctaatagcggaagacgaaaatggagaaattgtg
gaaatagcccctgaaggtgttgaagttacggaagaaatattggaaaaggctataaaatct
ggtatcaaagaaattattgtaaaaaatggtgatggagagatagttacttaccagattctt
ccaaaagagcctataaaatacagaagaagattgcttaggattacaaaggcttcgcttgaa
agagttggttggttaagtgcggcaagtttccaacaaacaccacaagtgttaacggaagca
gcaatagagggatcagtagatcatctcttgggattaaaggaaaacgtaattgttgggcaa
ctaatccccgcaggaacaggtctggatatgtttgcaaatattcaaatagaagagacgccg
aggcttgctcaaaaagaaaaaatggcataa
DBGET
integrated database retrieval system
