Thermosipho melanesiensis: Tmel_0838
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Entry
Tmel_0838 CDS
T00550
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tme
Thermosipho melanesiensis
Pathway
tme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tmel_0838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tme03019
]
Tmel_0838
03009 Ribosome biogenesis [BR:
tme03009
]
Tmel_0838
Enzymes [BR:
tme01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Tmel_0838
Messenger RNA biogenesis [BR:
tme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Tmel_0838
Ribosome biogenesis [BR:
tme03009
]
Prokaryotic type
rRNA helicases
Tmel_0838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
CMS1
AAA_19
AAA_30
Helicase_RecD
ERCC3_RAD25_C
AAA_7
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABR30699
UniProt:
A6LL98
LinkDB
All DBs
Position
877218..878762
Genome browser
AA seq
514 aa
AA seq
DB search
MNFEDFNLSEKTLYAINEKGFEKPTPVQKRVIPILLNKEKNLIVQAKTGTGKTAAFGIPL
IELLESKGYVQAIILTPTRELALQVSEEINSLKRKRLKILPVYGGQSISRQIEHLKRGVD
IVVGTPGRILDHLERKTIDLSKVEYFILDEADEMLDMGFIDDVEKILKSTSDEKIFLMFS
ATIPRRIIDLAKKYIKNYEVIKIADKQLTTNLTEQIYIELNENDKFEALCRIIDVEDDFY
GMVFCRTKVEVDNVSSKLIERGYDAEALHGDFSQYQRERVLKKFKEKRINILVATDVAAR
GIDISGLTHVINYSIPLNPEHYVHRVGRTGRAGREGVAITFVTPKEYRQLFRIKKFSKAK
IKEGKIPSVEQIIRAKSERIKSELLKEEKKLPNIYYNLADELLKKTNPREVIAKLLNMSF
KSLNPEKYEKVLPPKENEVVRLFIAKGKQAGLTKKDLVRFIVEKTNISPKVISDVVVLDK
FSFITVPYKEAEIILSIFKKRGRRSLISKAKERN
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
gtgaattttgaggattttaacttaagtgaaaaaacgctttacgcaattaacgagaaaggt
tttgaaaaaccaacacctgtacagaagcgagttattccaattttgttaaacaaagaaaaa
aatcttattgtacaggcaaaaacgggaacgggaaaaacagctgcatttggtataccactt
atagaacttttagaaagtaaaggttatgtccaagctattatattgactccaacaagggaa
ttggccttgcaggtttcagaggaaataaattcgttaaaaagaaagaggttaaagatatta
cccgtatacggtggccagtctattagtaggcaaattgaacatttaaaaagaggtgtggat
atagtagttggaactccggggagaattttggatcatttagaaagaaaaacaatagatctt
tcgaaggtagagtattttattttagacgaagcagatgaaatgcttgatatgggatttata
gatgatgtcgaaaagattttaaaaagtacaagtgacgagaaaatctttctaatgttttcc
gcaactatacctagaagaataattgaccttgcaaaaaagtatataaaaaattatgaggtt
attaaaatagcagataaacagcttactaccaatcttacagaacaaatatatattgaatta
aacgaaaatgataaatttgaagcactttgtagaataatagatgtagaagacgatttttat
ggcatggtattttgtagaacaaaggtagaagttgataatgtttcatctaaacttattgaa
agaggatatgatgcggaagcactacatggtgatttttcacagtatcaacgtgaaagggta
ctgaaaaaatttaaagagaaaaggataaatattctagttgcaacggatgttgctgcaaga
ggaatagatatttcaggcttaactcatgtaataaattattctataccacttaatcccgaa
cattatgtgcatagagtaggcagaacggggcgagcagggagagaaggtgtagcgataact
tttgtaactccaaaagagtacagacaactatttaggataaagaaattctcaaaagcaaag
ataaaggagggaaaaattccatcggttgagcagataataagggcaaagtctgaaagaata
aaaagtgaattgttaaaagaagagaaaaagttaccgaatatatattacaaccttgccgat
gagttattgaaaaaaacaaatcctagggaggtaatagcaaagcttttgaatatgtctttt
aaatctttaaatcccgaaaaatatgagaaagtgttaccgccaaaggaaaatgaagtggta
aggttgtttatagcaaaagggaagcaagcaggacttacaaaaaaagatcttgtaagattt
atagttgaaaagacaaatataagtcctaaggtgataagtgatgtagttgttcttgataag
ttttctttcataaccgttccgtataaagaagcggaaattatactatcaatatttaaaaaa
cgcggtagaagatcgttaatctcaaaagctaaagagagaaactag
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