Thermosipho melanesiensis: Tmel_1039
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Entry
Tmel_1039 CDS
T00550
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
tme
Thermosipho melanesiensis
Pathway
tme03030
DNA replication
tme03430
Mismatch repair
tme03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Tmel_1039
03430 Mismatch repair
Tmel_1039
03440 Homologous recombination
Tmel_1039
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tme03032
]
Tmel_1039
03400 DNA repair and recombination proteins [BR:
tme03400
]
Tmel_1039
Enzymes [BR:
tme01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Tmel_1039
DNA replication proteins [BR:
tme03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Tmel_1039
DNA repair and recombination proteins [BR:
tme03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Tmel_1039
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
HHH_3
DUF655
tRNA_anti-codon
DEDDh_C
RNase_H_2
SAM_GIDA_C
YhfH
T2SSK
Zn_ribbon_8
LapD_MoxY_N
Motif
Other DBs
NCBI-ProteinID:
ABR30900
UniProt:
A6LLU9
LinkDB
All DBs
Position
1065570..1069658
Genome browser
AA seq
1362 aa
AA seq
DB search
MKYVFEKLAFPVSRFYEYFNIEVSGEITKIVYEPSNRVLTFHVKKAFGDFNRLKEKLKVF
FGVNVEIEYEVTELEREEILGILNGTAPYVKDVEIFENEILIRTFGEFAKKKIEKEINHI
EKVTGKTVKVEIVEETFKIEPPKIENNLKKFDEDKKYYFPSNIPLNAKRVFLRGKVFKLE
QQYGVFSVYITDRKESILGKIFDNANEFSTLIKEGNWYYFKGSMGVDKRGGYYFAINDVF
KDPSPIERKDTYEEKRVELHIHSKMSDLDAIVDIKEVVRKVKEWGWSAVAITDHGNVQSI
PYLFEEAEKNGIKPIFGTEMYVLNEMGDIVKNLVEDKMLDDVTYTVFDLETTGTNAKFDE
IIEIGAVKYRDGKVINTFSSFVKPTKSISEFTQKLTGITDEMVKDAKSIEEVFPEFLKFI
DGTVLVAHNADFDYGFIREVNRRLYNKELDFAYLDTLKLSKVLLRGKVKSFGLGKLVEYF
KLGPFKHHRAFEDASVTADLFGKLLELLLKRGIKTLGQVNNLKNTSSISTIRTKKQFNHI
TILVRDKVGLKNLYKLVSDAHVKYFKYVPFVPKKELIKYREGLLLGTGCESGEIFQALTG
SSTDEEILEMLKDYDYVEIFPLDTIVSVEREVAKQVYKRLYELAKRLDLPVVMVSNAHFL
EPEDIKARHVLLSPIEKSNPHDDDLRDKDAKLYLRTTDEMMKEAFEIFEDEKIAYEIVVE
NTNKIANNMIEDVKPIKRKLHPPIIEGADEKVRSLSIKRAKELYGDPLPDVIEKRLEKEL
ESIIGHGYAVLYEIAHLIVKKANEDGYVVGSRGSVGSSFVAYLMGITEVNPLPPHYLCPK
CKYLEFSKDMGSGYDLPNKLCPKCGTKLEKTGQDIPFEVFMGFKGDKVPDIDLNFSGEYQ
ERAHSYIVELFGKDNVLRAGTISTIAEKSAIGYVKSYMEVKGETLHQAEQIRLAEMVAGV
KRTTGQHPGGLMIVPKDMTVYDFTPIQYPANKKDSEMCTTHFAYESIHDDLVKLDALGHD
DPTMLKLLYEYTGVDPTKVPMDDKKTLEIFSSLKPLKVKAEELGIDVGTIGIPEFGTNFV
QEMLKETRPKTFAELVRISGLSHGTDVWLNNAQDIIKSGNATLSEVISCRDDIMIYLINA
GVEESRAFKIMENVRKGKGISEDDEKLMREKNVPEWFIQSCKKIKYLFPKAHAVAYVSMA
FRIAYFKVHYPLAYYAAYFSIKGDEFSIETILRGIKSIKKKLAELNAQMKKDVKEKNEEK
VLEAALEMYLRGYSFLPPDILKSDYRRFIIEGNELRIPLNKIPGVGDNVALSIIQARMEK
PFTSIDDLKKRTKLSKAHINTMRKLRILEDLPETDQSTLFDF
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatgtttttgagaaattagcttttcccgtttcaaggttttatgagtattttaat
atagaagtatctggggaaataacaaagattgtttatgaaccttctaacagggttttaact
ttccacgtgaaaaaggcttttggagactttaacaggttgaaagaaaagttaaaagtgttt
tttggggttaatgtggagatagagtatgaggtaacagagttagaaagagaagagattttg
ggaattttaaacggaacggctccttatgtaaaagacgtagagatatttgagaatgagata
ttgataagaacatttggtgaatttgccaaaaaaaagatagaaaaggaaataaaccatata
gagaaggttacggggaaaacggtaaaagtggaaattgttgaggaaacatttaaaattgaa
cctccgaaaatagaaaataatttaaagaaatttgatgaagataaaaagtattatttccca
tcgaatataccgttgaatgcgaaaagggtatttttgaggggaaaggtttttaaattggaa
caacaatatggagttttttctgtatacattacggatagaaaagagtctattttgggaaag
atttttgataatgcaaatgaatttagtacgttaataaaagagggaaattggtattatttt
aagggttcaatgggtgttgacaaaagaggaggatattattttgcaataaatgatgtattt
aaagatccaagtcccatagaaagaaaagatacctatgaagaaaaaagagtagaattacat
attcattcaaagatgagtgatttagatgcaatcgtggatataaaggaagtagtgcgaaag
gttaaagagtgggggtggagtgcagttgcaataacagatcatggaaatgttcaatccatt
ccttatttgtttgaagaagcggaaaagaatggtattaagcctatttttggtacggaaatg
tatgttttaaacgaaatgggggatatagtaaagaatttggttgaagacaaaatgttagat
gatgtaacgtatacggtgtttgaccttgaaacaacagggacaaacgcaaaattcgacgag
attatagaaattggtgcggtaaagtacagagacggtaaggttattaataccttttcaagc
tttgtaaaacctacaaagagtatatcggaatttacccaaaaacttacgggaattacagat
gaaatggtaaaagatgcaaaatctatagaagaggttttcccggaatttttgaaatttatt
gatgggaccgttttagttgcacataatgccgattttgactatgggtttattagggaggtt
aatagaaggttatacaataaagaacttgattttgcttatcttgataccttgaaactttcc
aaagtactacttagagggaaggtaaaatcctttgggcttggaaaacttgtggaatatttt
aagttagggccttttaaacatcatagggcgtttgaagatgcaagtgtaactgccgatttg
tttggaaaattgttggagctacttttaaaaagaggtataaagacattggggcaggttaat
aatttgaagaatacttcatcaatctccaccattcgcactaaaaaacaatttaatcatatt
acaattttagtaagggataaggtaggattaaaaaatctctataaattagtttcagatgca
catgtaaagtattttaaatatgttccttttgttccgaaaaaggagttaataaaatacaga
gaaggtcttttattgggtaccggttgtgaaagcggagaaatctttcaagcgttaacgggt
tcttcaacggatgaagaaattttagaaatgttaaaagattacgattacgtggagattttt
cccttggatactattgttagtgttgaaagagaagttgcaaagcaggtatataaaaggttg
tatgaacttgcaaagagactagatttaccggtggttatggtaagtaatgcacattttttg
gaacctgaggatataaaggcaaggcatgtacttctttcgcccattgaaaagagtaatcca
cacgatgatgatttaagggataaagacgcaaagttataccttagaactactgatgaaatg
atgaaagaggcttttgagatttttgaagatgagaaaattgcgtatgaaattgttgtggag
aatacaaataaaatagctaataatatgatagaggatgtaaaacctataaagagaaaattg
catcctccaataattgaaggtgcagacgaaaaggtaagatcgttgtcaattaaacgtgct
aaagagttgtatggtgatccactacctgatgttattgaaaaaaggttggagaaagagttg
gagagtataataggacatggttatgctgtgttgtatgagatagcacaccttattgtgaaa
aaagcaaatgaggatggatacgtggttggttcacgtggatctgtaggttcttcgtttgtt
gcatatcttatgggaattacagaagtaaatcctttaccaccacattatctatgcccgaaa
tgtaagtatttagagttttcaaaagatatgggttcaggatacgatttgcccaacaagctt
tgtcctaagtgtggaacaaagcttgaaaagacagggcaagacattccatttgaagttttt
atgggatttaaaggtgataaggtgccggatattgatttgaatttttcaggtgaatatcaa
gaaagggcacatagctatatagttgaactttttggtaaagataatgttttaagggcaggg
actattagtaccatagcagaaaaaagtgcaatagggtacgtgaaaagttatatggaagtt
aaaggtgaaacattacatcaggcagaacagattaggttggcggaaatggttgctggggta
aaaagaacaactggacaacatccaggcggattgatgattgtaccaaaagatatgacggta
tatgattttacccctatccagtaccctgccaacaaaaaagactctgaaatgtgtacaacc
cattttgcttacgaatcaatccacgatgatttggtgaaattagatgcgcttggacatgat
gaccctactatgttgaaacttttgtacgagtatacaggagtagatccaactaaggttccc
atggatgataaaaagacgttggagatattctcctctttaaaacctttaaaggtaaaagcc
gaggagcttggcatagatgttggaactataggtattcctgagtttggaacgaattttgtc
caggaaatgttaaaagaaacaaggccaaagacgtttgcggaattagttagaatttccgga
ctttcacacggtacagatgtttggttaaataacgcgcaagatataattaagtcaggaaac
gccacactttcggaagttatatcttgtcgtgatgatattatgatataccttatcaatgca
ggtgtggaagaatctcgcgcatttaagataatggaaaacgttagaaagggaaagggcatt
tcagaagatgatgaaaagttgatgagagaaaaaaacgttcctgaatggtttatacaatct
tgtaaaaaaataaaatatcttttccctaaagcacacgcagttgcatatgttagtatggca
tttagaatagcgtactttaaggttcattatccccttgcctattatgcggcgtatttttca
ataaagggagatgaattttccattgaaactattttaaggggtataaaatctataaagaaa
aaattggcggagttaaatgctcaaatgaaaaaagacgttaaagaaaagaacgaagaaaag
gtacttgaggcggctcttgaaatgtacttaagaggttattctttcttgcctcctgatata
ttaaaaagtgattatagaaggtttataatagagggcaatgaattaagaataccacttaac
aaaataccaggtgtaggggataatgtggcgttatcaattattcaagcaagaatggaaaag
ccatttacatctattgatgatttaaaaaaacgtactaagttgagtaaagcacacattaat
acaatgagaaagttaaggattttagaagaccttccagaaacggatcaatccacactattt
gatttttaa
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