Thermosipho melanesiensis: Tmel_1393
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Entry
Tmel_1393 CDS
T00550
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tme
Thermosipho melanesiensis
Pathway
tme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Tmel_1393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tme03021
]
Tmel_1393
03019 Messenger RNA biogenesis [BR:
tme03019
]
Tmel_1393
Transcription machinery [BR:
tme03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Tmel_1393
Messenger RNA biogenesis [BR:
tme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Tmel_1393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
S1CSD-TOTE-2
NACHT
AAA_25
ATPase_2
Motif
Other DBs
NCBI-ProteinID:
ABR31240
UniProt:
A6LMT9
LinkDB
All DBs
Position
complement(1396049..1397320)
Genome browser
AA seq
423 aa
AA seq
DB search
MNVETFNIKDLEKKTIKELYKLAKEYDIARYTSMRKQDLIFAILEARAQSEGYFFGEGVL
EVHPDGFGFLRNMESMLPSSKDIYISNSQIRKFNLNTGDIISGVIRPPKEGERFFAMIKI
EAINYKDPELANERVNFENLTPCYPDTRYILETDTNTLSTRIIDLFSPIGKGQRGMIVAP
PKAGKTTILKEIANGIAKNYPDTVRIVLLIDERPEEVTDIKESVDAKVIAAPFDMPPDKQ
IKKAELTLEMAKRLVEYGHDVVILLDSLTRLARVYNINVPPSGKLLSGGVDPAALYKPKH
FFGAARNIKEGGSLTIIATSLIETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAIN
ITLSGTRKEELLFSPENMKKIWLLRKMLSSMDEEEGLRLIITKLKETKSNDDFLALIDSQ
KGS
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgttgaaactttcaacattaaagacttggaaaagaaaacaataaaagagttgtac
aagcttgcaaaagaatatgatatagccagatatacttctatgagaaagcaagatttaata
tttgccatacttgaagctagagctcaatcagaaggctatttctttggtgagggtgtgtta
gaagttcatccagatggatttggttttttgcgaaatatggaaagtatgttaccaagctca
aaagatatttacatctcaaattctcaaataagaaaattcaatcttaacaccggtgacatt
atatctggagttattcgtcctccaaaagaaggagaaagattttttgctatgataaaaatt
gaagcaattaactataaagaccccgaacttgcaaacgaaagagttaactttgaaaatctt
actccttgttatccggatacccgatatatacttgaaactgatactaataccttatcaacg
agaattatagatttgttctcacctattggcaaaggacaaagaggcatgatcgtagcacca
ccaaaagctggaaaaacaactattttaaaggaaatagcaaatggtatagcaaaaaattat
cctgataccgttagaatagtacttctaattgatgaaagaccagaagaagtaaccgatatc
aaagaatctgtagatgcaaaggttatagccgcaccatttgacatgccaccagataaacaa
attaaaaaagcagagttaacacttgaaatggcaaaaagacttgtagagtacggacatgat
gtcgtaatactcttagacagtttaactagacttgcaagagtttacaatattaacgtacct
ccaagtggtaaattactaagtggtggcgttgatcctgcagctttgtataaaccaaaacac
ttttttggtgcagcaagaaatatcaaagaaggtggtagtttaacaattatcgcaacttct
ttaattgaaactgggtctaaaatggatgaggtaatatttgaagaatttaaaggaacagga
aacatggagcttgttctttcaaggcaacttgcaaataaaagaatatttcctgctattaac
attacattatctggcacaagaaaagaagaacttttattttcacctgaaaacatgaaaaaa
atctggcttttgagaaaaatgctatcttctatggatgaagaagaaggattgcgattgatt
atcaccaaattaaaagaaacaaaatcaaatgacgattttttagcactaatagattcccag
aaaggaagttaa
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