Treponema medium: DWB79_00265
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Entry
DWB79_00265 CDS
T07695
Symbol
truB
Name
(GenBank) tRNA pseudouridine(55) synthase TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
tmed
Treponema medium
Brite
KEGG Orthology (KO) [BR:
tmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tmed03016
]
DWB79_00265 (truB)
Enzymes [BR:
tmed01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
DWB79_00265 (truB)
Transfer RNA biogenesis [BR:
tmed03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DWB79_00265 (truB)
Prokaryotic type
DWB79_00265 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
QSH96220
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All DBs
Position
complement(58666..59823)
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AA seq
385 aa
AA seq
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MPKSEPQFIIPFAKLSGVTSFTSLWQVKHALGTKKVGHTGTLDSFADGLLVLLSGKLTKL
VPYITDFDKTYRVLFYFGKETDTLDPEGTVISEKPLPVYADFIAASKQLTGTIEQVPPVY
SAVKQAGERLSDRIRRGEAVTVPPRTVTIYSIDIEEIFYAPKADTAGSAPPCSDTGAEHS
GDHASQGMLGAEHSETDAAALSTAQKVFGTKQSEIGVAQKVLGAVLCVRCSKGTYIRSLV
RDIAHRCGSAAYVYALRRTAVGPFTLEQAAGFSALPPFGSTAADSKPVSYSVIEEEIKQA
ALPLNEEIARAMHFQTAVLQEKYYSAFMNGKPISGHWFTGTRPLSDGGTIAVFYGGCCAG
LITKNGNRFHYETVFNQGRVNASDV
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgcccaagagtgaacctcaatttattatcccctttgcgaaactttccggtgtaaccagc
tttacctccctttggcaggtaaagcatgcgctcggtactaaaaaagtggggcataccggt
acgctcgacagctttgctgacggtttactggtgttgctttccggaaaattgactaaactt
gtaccgtatatcacggattttgataaaacctatcgcgtgctgttctatttcggaaaagaa
accgatacgctcgaccctgaaggaactgttatctccgaaaagccgctcccggtgtatgcc
gactttattgcggcaagcaagcagctgaccggaaccatcgagcaagtgccgcctgtttat
tcggcggtaaagcaggcgggggagcggctttccgatagaatacggcgcggagaagcggta
accgttccacctcgaaccgttaccatctatagcatcgacattgaagaaattttttatgcc
ccgaaagctgatacggcgggttccgcccccccctgctcggatacgggcgccgaacattcc
ggcgatcatgcgtctcaaggaatgctaggcgccgaacactctgaaacggatgcagctgca
ttgagtacggctcaaaaagtatttggtaccaaacaatccgaaataggcgtagctcaaaaa
gtgcttggcgctgtgctatgcgtgcgttgctccaaggggacgtatatccgttcattggtg
cgggatattgcgcaccgctgcggttctgccgcgtatgtctatgcgcttaggcgtacggct
gtcgggccgtttacccttgaacaggcggcaggtttttcagcgttgcctcctttcggaagc
actgcggcggattcaaagcctgtatcgtattcggttattgaagaagagataaagcaggca
gctttgcctttgaatgaagaaattgctcgcgctatgcattttcaaacagcggtgcttcaa
gagaaatattattctgcgtttatgaacgggaagcccatcagcgggcactggtttacaggt
acgcgaccgctttctgacggcggaactatcgcagtcttttacggtggatgctgtgcagga
ctgattacaaaaaacggtaaccggtttcattatgagactgtattcaatcaaggcagggta
aacgcgtcagatgtgtaa
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