Treponema medium: DWB79_02425
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Entry
DWB79_02425 CDS
T07695
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tmed
Treponema medium
Pathway
tmed03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DWB79_02425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmed03400
]
DWB79_02425 (mfd)
Enzymes [BR:
tmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DWB79_02425 (mfd)
DNA repair and recombination proteins [BR:
tmed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DWB79_02425 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QSH96637
LinkDB
All DBs
Position
complement(550541..554140)
Genome browser
AA seq
1199 aa
AA seq
DB search
MKEHTLQDSIHSWKTMQDAFSSLREGRFPYHIHGLSGGIFAFFLAEYVRHFNANLYIVVP
TEKEIEELRADLDIAGLQAQILPWWGNMAYRPVQNSAPVFAERAQVLAELCAGAPVSGSV
SSGLTSKAVSGLAAPNSAISNSTANTVTVMTQRAFLTPVPPPDYLKTLTCTLYKGKEIDT
EKIASLLVQWGYTRVPRVSVRGEFALRGEVLDVCAAANKGSQHTAYRIQFDFTTIEKIKS
FDMHTQASVEEFDSLTLYPMKEVIWDDERIAAFERNVQNMPEFTAEGMEKLIAHLKEHRA
FDGEELFYPLCFEKPASVLDYLEYLHGAASTQRNADGASRHQGTGGATKPAVLLYMDYDR
QRNAVEALEREYHGLYNKITRAIDDDLKHNLLITEYPMPQRLLLPFAELTESYPQSLFLR
TLKESDETGASIVFNCDPPRSFFGNIVYLKEELTHLQQEGWRIFVFAESDAQALRIGELL
KDIKATVLPLTLSSGFGIPELKILVIQENEIFGRRRRIPKSVKQVRSSVIDTFVELNPGD
YVVHVNYGIGQFKGIERVKTLGHERDYINLLYAQDETVFIPIEQANLVQRYIGNEGEAPR
LDIIGSKAWENRKNKVKKSVEDIADKLIDLYSRRKAAAGFAFAKDNEWQTAFEAAFPYEE
TEDQLTCIADVKTDMEKPIPMDRLICGDVGYGKTEIAMRAAFKAVMSGKQAAFLAPTTIL
AEQHFDTFQERFQKFPVKLARLSRFVPKAEQKKVLTQLKNGELDIVIGTHRVIQKDVQFK
DLGLMIVDEEQRFGVKDKERLKQMKTNIDCLSLSATPIPRTLHISLLKIRDMSLLTTPPQ
NRRPVETVISPFDPEKIAQAIRFEVDRGGQVFYLHNRVESLEETRYKIQQLIPEVLIDIA
HGQMSATELEDIFRRFNMGGFHVLIATTIIENGIDIPNANTIIIDRADMYGVSQLYQLRG
RVGRSDRKAYAYLLYPENKALSEVAMKRLQVISDFTELGSGFKIAMKDMEIRGAGNLLGK
EQSGDIYSVGFDLYLRLLEEAVERLQNAGYEPETEPVIELEYTGFIPDSYIRVPETKMEI
YKKIAAVRTAEELDRLYAELSDRFGPVPEEAESLLSLAEIKIICAKLAIASLKERNGTVR
ITFAKVSKISIDKLLRMIKESAGRVKLDAKQPNVIMLETGSIGLKEKSEFISEKLNQLI
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaacatacattacaagacagtatccattcttggaagaccatgcaagacgctttt
tcctctttgagggaagggcgttttccgtatcatatacacggactttcaggtggtatattc
gctttttttcttgccgaatatgttcggcattttaacgctaatctctatatcgtcgtaccg
acggaaaaagaaatagaagagttacgcgcagacctcgatattgcaggattacaagctcag
attttgccgtggtggggcaatatggcatatcgccccgtacaaaactctgcgccagtgttt
gcagaacgtgctcaagttttagccgaactctgcgcaggggcaccggtctccggttcggta
tcgtccggcttgacgtcaaaggcggtgtccggattggcggcaccaaactcagcgatatca
aactcgacagcaaacacagtaacggttatgacccagcgggcatttctaacgccggttccg
ccgcccgactaccttaaaacacttacctgtactctctataaaggtaaggaaatcgatacg
gaaaaaatagcctcgctgttggtgcaatggggctatacgcgggtgccgcgggtaagtgtc
cggggcgagtttgcgctccgtggcgaggtgcttgatgtctgcgccgccgctaacaaaggg
tcgcaacacaccgcttaccgtatccaattcgactttactactatcgaaaaaataaaatcc
ttcgatatgcacacgcaggcctcggttgaagaatttgacagccttacgctctatccgatg
aaagaagttatctgggatgatgagcggatcgccgcgttcgaacggaatgtgcagaatatg
cctgaatttaccgccgaaggcatggaaaagcttattgcgcacttaaaagaacaccgtgct
tttgacggtgaagagcttttttatccgctctgttttgaaaaacctgcgagcgtccttgat
tatcttgagtatctgcacggcgctgcatcaacacagcggaatgcagatggcgcttcaaga
catcagggtacaggcggcgctacgaaacctgcagttctcctgtatatggactacgaccgg
cagcggaacgcggtggaggcgctggagcgggagtatcacggcttatataacaaaatcacc
cgtgccattgacgacgacctcaaacataaccttttaattaccgaatatcccatgccgcag
cgccttttgttgccctttgcggagttgaccgaaagctatccgcagagccttttcctccga
acgctgaaagaatcggacgaaaccggagcgtcgattgtgtttaactgcgacccgccgcgc
agttttttcggcaacatcgtgtatctaaaagaagaattaacgcatttgcagcaggaaggc
tggcgtatttttgtgtttgcggaaagcgatgcgcaggcgctccgtatcggcgaattgctc
aaggatattaaagctaccgtgctgccgctcacactttcttccggcttcggcatccccgag
ctgaaaatactcgttattcaagaaaacgaaattttcggcaggcggcggcgcatcccgaaa
tcggttaagcaggttagaagctcggttatcgatacctttgtggaactcaatcccggcgat
tatgttgtccacgtcaactacggtatcggacagtttaaggggattgaacgcgttaaaacg
ctggggcatgagcgcgactatatcaacctgctgtacgcgcaggacgaaacggtgtttatc
ccgatcgagcaggcgaacctcgtgcagcggtatatcggcaatgaaggcgaagcaccgcgg
ctggatattatcggttctaaggcgtgggaaaaccggaaaaacaaggttaaaaaatcggtt
gaagatatcgccgataaactcatcgacctgtattcccgccgtaaagccgccgccggtttt
gcctttgcgaaagacaacgaatggcaaaccgcttttgaggctgccttcccgtatgaagag
accgaagatcagctgacctgtattgccgatgtaaagaccgatatggaaaaaccgataccg
atggatcggctcatctgcggcgacgtcggatacggtaagacggaaattgcaatgcgggcg
gcttttaaggcggtgatgagcggaaagcaggctgcctttttagctccgaccaccattctc
gcggagcagcactttgatacctttcaagaacgctttcaaaaatttccggtaaaactcgca
cggctttcccgctttgttcccaaggctgaacagaaaaaagtgctgactcagctgaaaaac
ggcgaactggatatcgttatcggtacacaccgagttatccaaaaagacgtgcagtttaaa
gatttgggactgatgattgttgacgaggaacagcggttcggggttaaagacaaggagcgg
ctcaaacagatgaagacgaatatcgactgcctctctttgagtgcgacccccatcccgcgt
accctgcatatcagtctgttaaaaatccgcgacatgagccttttaaccacaccgccgcaa
aaccgccgtccggtagaaaccgttatttctccgtttgaccctgaaaaaattgcgcaggcg
atccgttttgaagttgaccgcggcggacaggtgttctatctgcataaccgcgtggagagc
ctcgaagaaacacggtataaaatccagcagctcatccccgaagtgcttatcgatattgcc
cacggacagatgagcgctaccgaacttgaagatattttccgccgcttcaacatgggcggc
tttcatgtccttatcgcgactactatcatcgaaaacggtatcgacatccccaatgcgaac
accatcatcatcgaccgcgccgatatgtacggcgtttcgcagctgtaccaactgcgcggc
cgcgtcgggcgttccgacagaaaggcatacgcgtatctcctctatcccgaaaacaaggcg
ttgtcggaggttgcgatgaagcggctgcaggttatctccgattttacggaactcggctcc
ggctttaaaattgcaatgaaggatatggaaatccgcggcgcagggaatctgttgggaaaa
gagcagtcaggcgatatttattccgtcggttttgacctttaccttcgcctgctggaagag
gcggtggaacggctgcaaaacgccggttacgagcctgagacggaaccggtcatagagctt
gagtacacgggctttatccccgacagctatatccgcgtgccggaaacaaagatggaaata
tacaaaaaaatcgccgccgtccgtaccgcggaagaactggataggctctacgcggaactg
tccgaccggtttggccccgttccggaagaagcagaaagcctgctttctcttgccgaaatc
aaaattatctgtgcaaaactcgcaatcgcctcgcttaaagagcggaacggcaccgtgcgc
atcacctttgcgaaggtctcaaagatttctatcgataaattgctccgcatgataaaagag
tcggccgggcgggttaaactcgatgcaaagcaaccgaacgtcatcatgctcgaaaccggc
tctatcggcttaaaagaaaagagcgaatttatcagcgaaaaactcaatcagctgatataa
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