Treponema medium: DWB79_08085
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Entry
DWB79_08085 CDS
T07695
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tmed
Treponema medium
Brite
KEGG Orthology (KO) [BR:
tmed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmed03032
]
DWB79_08085 (topA)
03400 DNA repair and recombination proteins [BR:
tmed03400
]
DWB79_08085 (topA)
Enzymes [BR:
tmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DWB79_08085 (topA)
DNA replication proteins [BR:
tmed03032
]
Prokaryotic type
DNA Topoisomerases
DWB79_08085 (topA)
DNA repair and recombination proteins [BR:
tmed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DWB79_08085 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Toprim_2
DUF7340
Motif
Other DBs
NCBI-ProteinID:
QSH97704
LinkDB
All DBs
Position
complement(1823090..1825219)
Genome browser
AA seq
709 aa
AA seq
DB search
MAKKNATKTKKTNLIIVESPAKAKTIEKYLGSGYTVKASMGHLIDLPKSRIAIDIEHGFQ
PEYITVRGRAKLLKELQQDAKNAKNVFLASDNDREGEAIAYHLCNAIREKCEDVPINRIV
FNEITPQAIKTAVQNPMNIDEAKVNAQKARRVLDRLVGYNLSPLLWQKVKNGLSAGRVQS
VALRLICEREAEVESFIPEEFWTLEGAFKKGKTAFNAQLALYKGEKPTLKNEREVQAIID
VLHGKEATITDVKSTQKTIHPKPPFTTSTMQQTAANRLGFTSRKTMQIAQQLYEGIAVGS
SRVGLITYMRTDSVRISDVALAEVRKWIGEQYPAFLPEKPNFYSVGAKAQDAHEGIRPTY
CNYTPDYLKDYLNRDQLRLYTLIWERFTASQMTGAKTETLSYEISAGDAVFRTASTKVTD
KGFYAVLNLLLSKEEKGKTLPALKTGDILTVDSLTPEQHFTQGPARYTDASIVKMLEQKG
IGRPSTYAPIISVLLDRYYVNRSNKQLVPTQLGRIINDLLVANFNDVIDVNFTAGMEQKL
DEIEEHNADWSKIIGSFYTPFITQVDSVMAHLGSLKGSLDEPTNFTCEKCGKRMMKKLGR
FGFFLACEGFPECRNTKSIPLAKCPRPGCGGDIVSRRAKGRGKEFFGCTNFPKCNFISHF
KPINAACPKCGWFMVEKYDKKNGSYKACVNPDCDYLHSVVEGVEDQDID
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaaaaacgcaacaaaaacaaaaaaaacaaacttaattatcgtagagtctccg
gcaaaagcaaaaacgatcgaaaagtatttaggcagcggctatacggttaaagcttcgatg
ggacatctgatcgatctaccgaagtcgcgtatcgcaattgatatcgaacatggatttcaa
cccgaatatataaccgtacgcggcagagctaaacttttaaaagagctgcagcaagacgca
aaaaatgctaagaatgtcttcctcgcaagtgataatgaccgcgaaggggaagctatcgcc
tatcatctatgcaatgcaatacgggaaaaatgcgaagatgtaccgataaaccgtatcgtc
tttaacgagatcacgccgcaggcaattaaaacagccgtgcagaatcctatgaatatcgat
gaggcaaaggtcaatgcgcaaaaagcccgccgtgtactcgatcgacttgtcggctataac
ctttctccgctactctggcaaaaagtaaagaacggactttccgcggggcgcgtacaatcg
gttgcgctgcgccttatctgcgaacgggaagcggaggtagaaagttttatccccgaagaa
ttttggacacttgaaggcgcctttaaaaaaggaaaaaccgcctttaacgcccaactcgct
ttatataaaggagaaaaaccgacgcttaaaaacgaacgggaggttcaggcgattatcgat
gtgttgcacggaaaagaagcaacgattaccgatgtcaaaagcacgcaaaagaccatccat
ccgaagcctccgtttacaacctccacgatgcagcaaacggcagcaaacaggctcggcttt
acttcccgtaaaacgatgcagattgctcaacagttgtacgaaggtatcgccgtcggctca
agccgcgtcggtttaatcacctatatgcgtaccgactctgtgcgaatctccgatgttgcc
cttgcggaagtgcgtaagtggatcggcgagcaatatcctgctttcttaccggaaaaaccc
aatttctacagcgtcggagcaaaagctcaagatgcccacgaaggtatccgccccacgtac
tgtaactatacacccgattatctgaaagactacctcaaccgcgaccagctgcgcctctat
acccttatctgggaacgctttaccgcgagccagatgaccggcgcaaagactgaaacgctc
agctatgagatttccgcaggagatgcagtctttagaacggcttctaccaaggtaacggac
aaaggattctatgcagtgctcaatctgctcctttcaaaagaagaaaaaggtaaaacgtta
ccggcgttaaaaaccggcgatattctgacggtagacagtttgacacccgaacagcacttt
acgcagggacctgcccgctataccgatgcaagtatcgttaagatgttggaacaaaaaggc
atcggacgcccatccacgtatgcgccgattatttcggtactgctcgaccgctactacgtc
aaccgctccaataagcaactcgttcctacccagctcggcagaataatcaatgatctgcta
gtcgcaaacttcaacgatgtgatcgacgtcaattttaccgccggtatggaacaaaaactg
gacgaaatagaagaacacaatgccgactggtcaaaaattatcggctccttttacacccca
ttcatcacacaggtggattcggtgatggcgcatttaggcagtttgaaaggaagcctcgat
gagccgacaaacttcacgtgcgaaaaatgcggcaaaagaatgatgaaaaagctcggccgt
ttcggttttttcttggcgtgcgagggtttcccggaatgtcgtaataccaaatctatccca
ttggcaaaatgtccgcgtcccggatgcggtggggacattgtatcccggcgggcgaaaggg
cgaggcaaagaattcttcggctgcaccaactttccaaagtgcaattttatctctcatttt
aagcctatcaacgcagcgtgccccaaatgcggctggtttatggttgaaaaatacgataaa
aagaacggaagctacaaagcctgtgtaaaccccgattgcgattacctgcatagcgtcgtc
gaaggcgtagaagatcaggatatcgactag
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