Thermocaproicibacter melissae: NOG13_04120
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Entry
NOG13_04120 CDS
T09029
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
tmel
Thermocaproicibacter melissae
Pathway
tmel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NOG13_04120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmel03019
]
NOG13_04120
Messenger RNA biogenesis [BR:
tmel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NOG13_04120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Presenilin
Lactamase_B_6
CFAP54_N
Motif
Other DBs
NCBI-ProteinID:
WBY65033
LinkDB
All DBs
Position
complement(820011..822014)
Genome browser
AA seq
667 aa
AA seq
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MPQAEMGNGTHTIGLYEKVEVPKHRVGQVRSKRRQPKAEAAESTSANENSSADQERQPSR
RRQSSKVSVVQAQLKAQTVSEVTAVQNTAKPEQSAQKNTEKRSGQHSKSAKKAPQKPPIR
VYFLGGLNEIGKNFTVFECLDDMIIVDCGMAFPDDDMLGVDLVIPDFTFVERNADKIRGV
VLTHGHEDHIGALPYLLEKFNFPIYGTKFTLALVDSKLKEHGLSGKVRAISVRPGEHIRL
GCMDVEFVHVNHSVPDSVALAIHSPAGTLVHTGDFKIDCTPALGEMIDLGRFGQLGKEGV
LAMLCDSTNAEREGYTKSESKVDSSFDMLFKRAENSRIIIATFASNVSRVQQIINCAVKY
GRKVALSGRSMVNVMSVGVEMGYLDVPKGTLIDIDMINRYPKDKIVLVTTGSQGEPMSAL
TRMAFADHRKVEVGPGDFIIISARPIPGNEKTIGNVIDELMKRGCQVVYESMYDVHVSGH
ACREEIKLLQAIVKPKYYIPVHGEQKHLRKNASIAYELGKDPKDVFIGDIGDVVELHEDY
MKRLPSVPAGRTLVDGLGVGDVGSIVLRDRKHLAEDGLMIAVCTISAQDGHIISGPDVVS
RGFVYVRESEPLIEEARNLVTEVLEDCAENQIHDWGTLKTKIKDELSRMLYERTRRSPMV
LPIIMEI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgccacaggccgagatggggaacggaacacataccatcggcctttatgagaaggtggaa
gtgccgaaacaccgtgttggccaagtgcgctcaaaacgccgccagcctaaggcggaagcg
gcggaaagcacgtctgcgaatgaaaacagttctgcagaccaggagcgtcagcccagtagg
cgccgtcagtcttccaaagtttccgttgtgcaagcacagttgaaggcacaaaccgtttcc
gaggtaaccgctgtgcagaatacggcgaaaccggagcagagtgcgcagaagaacaccgaa
aaacgttcgggtcagcactccaaatctgcgaagaaagcgccgcagaaaccgccaatccgc
gtttattttctcggtggtttgaacgaaatcggaaaaaacttcacggtgtttgaatgcttg
gatgacatgatcatcgtggattgcggtatggcattcccggacgatgatatgcttggcgtt
gatctcgttattccggactttacttttgtagaacggaatgcagataagattcggggagtt
gtgctgacgcatggccatgaagaccatatcggcgcgcttccgtatctgctggaaaaattc
aattttccgatttacggaacaaaatttacccttgcactggtcgatagcaagctaaaagag
catggcctttccggcaaagtcagagcgatcagcgtacgtccaggcgagcatatccgcctt
ggctgtatggatgtcgaatttgttcatgtaaaccattccgtgccggattccgttgcgctg
gccattcattcgccggcaggtacactcgtccatacgggtgactttaagattgactgcact
ccggcactcggcgaaatgattgatcttggccgctttgggcagcttggcaaagaaggcgtt
cttgccatgttatgcgattccaccaatgccgagcgcgagggatataccaaatcggaaagt
aaagttgacagctcgtttgatatgttgttcaaacgcgcagagaacagccgcattatcatt
gctacgtttgcttccaatgtcagtcgcgtgcagcagattataaattgtgcggttaaatat
gggcgcaaggtcgcgctttccgggcgcagcatggtcaatgtcatgagcgtcggcgttgag
atggggtatctcgatgtcccgaaggggacgctgattgatattgacatgattaatcgctac
ccgaaagacaagatcgttctcgttacaaccggcagccaaggtgagccaatgagcgctcta
acccgtatggcatttgccgatcaccgtaaggtggaagttggccccggtgatttcatcatc
atttcagcccgcccgattccgggaaatgaaaaaacaatcggcaatgtcattgacgaactg
atgaagcgcggctgccaagtcgtttatgaatccatgtacgatgttcatgtatcggggcat
gcctgccgcgaagagattaaacttcttcaggctattgtcaagccgaagtactatatcccc
gttcacggcgagcagaagcatctgagaaagaatgcttccattgcttatgaacttggaaaa
gatccgaaagatgttttcatcggagatatcggtgatgtggtcgaactacatgaagactac
atgaagcggcttccgtccgtgcccgcgggaagaactcttgtagacgggctcggtgttggc
gatgtgggcagcattgttcttcgcgaccgcaaacaccttgcggaagacggccttatgatt
gccgtctgcacaatttccgcgcaggatgggcatatcatttctgggccggatgttgtgtca
cgaggctttgtttacgttcgcgaatcagagcctttgattgaagaagcgcgcaaccttgtt
accgaagttctggaagattgcgcagaaaaccaaattcacgactggggaactttaaagacc
aaaattaaggacgaactgtcccgcatgctgtatgagcggacacgtcgcagtccgatggtt
ttgccgattatcatggaaatctga
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