Thermocaproicibacter melissae: NOG13_05305
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Entry
NOG13_05305 CDS
T09029
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tmel
Thermocaproicibacter melissae
Pathway
tmel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tmel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NOG13_05305 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmel03021
]
NOG13_05305 (rpoC)
03400 DNA repair and recombination proteins [BR:
tmel03400
]
NOG13_05305 (rpoC)
Enzymes [BR:
tmel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NOG13_05305 (rpoC)
Transcription machinery [BR:
tmel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NOG13_05305 (rpoC)
DNA repair and recombination proteins [BR:
tmel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NOG13_05305 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
LPD26
RPN1_C
NusG_add
Motif
Other DBs
NCBI-ProteinID:
WBY63391
LinkDB
All DBs
Position
complement(1064694..1068236)
Genome browser
AA seq
1180 aa
AA seq
DB search
MEFNTFESIKIGLASPEKIREWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWECH
CGKYKRIRYKGKICERCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLMLDIS
PRMLEKVLYFALYIVTNPGNVRELQKKQLLNEKEYRDMREKYEDDFQAEMGAEAIKKLLA
EIDLDELSAELKAELANATGQKRVRILKRLEVVEAFRLSGNRPEWMILDCIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPDLKMYQCGLPKE
MALELFKPFVMKRLVETGASGNIKAARKAVERAKPEVWDALEIVIKNHPVLLNRAPTLHR
LGIQAFEPVLVEGRALKLHPLACTAYNADFDGDQMAVHVPLSSEAQAEARFLMLAAGNLL
KPSDGRPVTVPTQDMVLGSYYLTLDKDGELGEGKAFRNFEEAIMAYDNHIIGLHAKIKVR
RTVEVNGKIESGVIETTVGKMIFNQPIPQDLGFVDRSKPENRFRLEIEFLVGKKQLGEII
DRCIKVHGVPKTSEVLDAIKAQGYKYSTKSGITVSVSDATIPPQKAEIIAEAEKKIDTIT
ELYKNGLLSNSERYDAVLKTWTKATDDVSDALQKNLDRYNPIFMMADSGARGSMSQIRQL
AGMRGLIANTSGKTIEIPIRANYREGLNILEYFISSRGARKGLADTALRTADSGYLTRRL
VDVSQDVIIREDDCGTNEGLEVYDIKEGKEVIESLHERLIGRYLVEDFVDEKTGEVLVSK
DKMMDDEDADIIESHGVKRIRIRSILNCRAKHGVCRKCYGSNLATRMPVKVGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVASAEDITQGLPRVDELFEGRKPKHLAIISEISGKVSFEEI
KKSRHVVVTNDETGESKSYLIPFGSRVIVNDGDEIKAGTRLTEGSVNPHDILAISGPEAV
QDYLIEEVQKVYRMQGVDINDKHIEVIIRQMMKKVRVDDPGDTTLLPSALVEKSELEAEN
EIIRERIAAGETELREATATPVLLGITKASLATDSFLSAASFQETTRVLTDAAIKGKVDP
LLGLKENVIIGKLIPAGTGMKCYRDTKVEVVNDNLTDNAG
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatacttttgaatccattaagattggacttgcttcaccggagaaaatccgt
gagtggtcgcatggcgaggttaagaagccggaaacgatcaactaccgaaccctgaaaccg
gaacgcgacggacttttctgtgaacggatttttggacctaccaaggactgggagtgccat
tgcggaaaatataagagaatccgctataaaggaaaaatctgtgagcgctgcggcgttgaa
gtcacacgctccaaggtgcgccgcgagcgtatgggccacattgagctggctgctccggtt
tcccacatttggtatttcaaaggcatcccgtcccgcatgggcctgatgcttgacatttct
ccccgtatgctggaaaaagtgctttattttgcactttacatcgtaacgaacccgggaaat
gtccgcgaacttcagaagaagcagctcctcaacgaaaaagaataccgcgatatgcgtgaa
aaatatgaggacgatttccaggcggaaatgggcgcggaagcgattaagaagcttctcgcc
gaaatcgacctcgatgagctttcagcggaactgaaagcggaactcgcaaatgccacggga
caaaaacgcgtgcgcatcctgaaaagactggaagtcgtggaggcgttccgcctctccggc
aaccgtccggagtggatgattctggattgcattccggtcattccgccggatttacgcccg
atggtacagcttgacggcggacgtttcgcgacatccgacctgaatgatctgtaccgccgc
gtcatcaaccgcaataaccgcttgaagagacttcttgaactcggtgcgccggatattatc
gtgcgcaacgaaaagcgtatgcttcaggaagcggttgacgccctgattgacaacggccgc
cgcggccgtcctgtcaccggaccgaacaaccgtccgctcaagtccctttccgatatgctg
aaaggtaagcagggacgtttccgtcaaaacctgctcggtaaacgtgttgactattccggc
cgttccgttatcgtcgtcggacctgacctgaaaatgtatcagtgcggtctgccgaaggaa
atggctctcgaactgttcaaaccgtttgtcatgaaacgccttgtggaaaccggtgcatcc
ggcaatatcaaggcggcccgcaaagcggtggaacgtgcaaaaccggaagtttgggacgca
cttgaaattgtcattaagaatcacccggttctgctgaaccgtgcacctacgctgcaccgc
ctcggtattcaggcatttgagccggttttggtagaaggccgtgctttgaagctccatccg
ctcgcctgcacagcatacaacgcagacttcgacggcgaccagatggctgttcacgtgccg
ctttcttccgaggcacaggcagaagcccgcttcctcatgcttgcggcaggaaacctgctg
aagccttcggacgggcgtccggttacggttccaacacaggacatggtcctcggttcctac
tacctcacgctggataaagacggcgaattgggcgagggcaaagcgttccgtaactttgaa
gaagccatcatggcgtatgacaatcatattatcggcctgcatgcaaagattaaagttcgc
agaacggttgaagtaaacggaaagattgagtccggcgtcattgaaacgactgtcggtaag
atgattttcaaccagccgattccgcaggacctcggttttgtcgaccgctccaagccggaa
aacagattccgtcttgagattgagttcttggtcggcaagaagcagctcggcgagattatt
gaccgctgcattaaggttcatggtgtgcctaagacctccgaggttttggatgccattaag
gctcagggttataaatactccactaagagcggcatcaccgtttccgtcagcgatgcgaca
attccgccacagaaagcggaaatcatcgcagaagcggaaaagaagattgatacgattacc
gaactctataagaacggtcttctgtcgaacagcgagcgctatgatgcggttctgaaaaca
tggacgaaggcaacggatgatgtttccgacgcgctgcagaagaaccttgaccgctacaac
ccgatcttcatgatggcggattccggtgcccgtggttctatgagccagattcgtcagctc
gccggtatgcgcggattgattgcaaatacgtccggtaaaacaattgaaattccgattcgt
gcaaactaccgtgaaggcctgaatatcctcgaatacttcatttcatcgcgcggtgctcgt
aaaggcctcgccgatacggctttgagaacggctgactccggttacttgacccgccgcctt
gtcgatgtttcgcaggatgttatcattcgcgaagacgactgcggtacaaatgaaggcctt
gaagtctacgacatcaaggaaggcaaggaagttatcgagtccctgcacgaacgcctcatc
ggcagatatcttgtagaagactttgtcgatgaaaagacgggcgaagtgcttgtttccaaa
gataagatgatggacgacgaagatgcagacatcattgaaagccatggcgtcaagcgcatc
agaattcgttccatcctgaactgccgtgcaaagcacggtgtctgccgcaaatgttacggc
tccaaccttgcaacacgcatgccggtcaaggtcggtgaggctgtcggtatcatcgccgct
cagtccatcggtgaaccgggtacgcagcttaccatgcgtacgtttcataccggcggtgtc
gctagcgcagaagacatcacacaaggtctgccgcgtgttgatgaattgtttgaaggcaga
aaaccgaagcatcttgccatcatcagcgagatttccggcaaggtctccttcgaggaaatc
aagaagagccgccatgtggtggttaccaatgacgaaaccggcgagagcaagtcatacctg
attccgttcggttcacgcgtcatcgtgaacgatggcgatgaaatcaaggcaggtacgcgc
ctgacggaaggttccgtcaacccgcacgatattcttgcaatcagcggacccgaagctgtc
caggattacctcattgaggaagttcagaaggtttaccgcatgcagggcgttgatatcaac
gacaagcacattgaggtcattatccgccagatgatgaaaaaggttcgcgttgacgacccg
ggcgacacaactctgcttccgagtgccctcgtggagaagagcgaacttgaggccgaaaac
gagattatccgtgagcgcatcgctgccggtgaaaccgaactcagagaagcaacggctacg
ccggtgctcctcggtatcaccaaggcgtctcttgctacggattcgttcctgtctgctgct
tccttccaggagacaacgcgcgtcctgaccgatgcggcgatcaaaggcaaagttgacccg
ctgctcggcctgaaggaaaacgtcatcattggtaagctgattcctgcaggaactggtatg
aaatgctatcgcgacacgaaagttgaggttgtaaacgacaacttgacagataacgcggga
tag
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integrated database retrieval system
