Thermocaproicibacter melissae: NOG13_05630
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Entry
NOG13_05630 CDS
T09029
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
tmel
Thermocaproicibacter melissae
Pathway
tmel03410
Base excision repair
tmel03430
Mismatch repair
tmel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tmel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NOG13_05630 (recJ)
03430 Mismatch repair
NOG13_05630 (recJ)
03440 Homologous recombination
NOG13_05630 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmel03400
]
NOG13_05630 (recJ)
DNA repair and recombination proteins [BR:
tmel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NOG13_05630 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NOG13_05630 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NOG13_05630 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
tRNA_anti-codon
His_biosynth
Motif
Other DBs
NCBI-ProteinID:
WBY63454
LinkDB
All DBs
Position
complement(1133986..1136052)
Genome browser
AA seq
688 aa
AA seq
DB search
MSIKKWQVMSFDRIQATKLAAEVGVPPLLGVLLQTRGITDPGQARTMLSPGAEFSDPFLL
PDMQKAVERIGRALDSFEKIAVYGDYDADGVTATAMMYSYLESCGGNVIFYIPDREAEGY
GLNMDAVKALHDEGVSLILTVDNGISSVAEVEYAASLGIDTVITDHHRPKSELPKAVAVV
DPWREDCTCPYRDYSGAGVAFKLLTALEGPEFGAEALLDNYADLVAIGTIGDVVPLTGEN
RQLVSSGLIALSNGDRPGLAALLELCGMDQRPLTAMDVAYTIVPRINATGRMGAADRAVR
LLTADSMEDAENLAAEICSENASRRKIEDEVLQEAMNCFRENPSLLYDRVLVVWGENWHH
GVIGIVAAKITERFGKPCIVLSCNGKDAKGSGRSVEGFSLFDAVCSCDDLLTKYGGHPMA
AGMSLPVSNLEEFRKRINQYAASLPGPMPVPLLRIDCVLKPEKLSVDIPQSLQMLEPFGT
GNPFPLFGLFGVVITDITPVGGGKHLRLTVKKGNTSVSCMKFGVTLEQFAFRVGDTVDLA
VVLKARPYGGHLTLSVIVRDIRLAGMDEEALISGRALYEKALRGELLSPEETAELLPTRE
VFSTVYRALRDNGGFCGEPEYFFSRLSGAGGFAAFLTALAVFQDCGLIEEDRESNTYRVR
VMRTSGKVNLEESPLLVSLHSAGKAGEQ
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
ttgagcatcaaaaaatggcaggtcatgtcgtttgaccgcattcaagcgacgaagctggca
gcagaggtcggtgtacctccgttgctcggagtgcttttgcagactcgcggcattacagac
cccgggcaggcgcggacaatgctctcgcccggggccgagttttctgacccctttttgttg
ccggatatgcagaaagccgttgaacgcatcggccgcgctctggacagctttgagaagata
gccgtttacggagactatgacgcagatggcgtcacagccaccgctatgatgtactcttac
ttggaatcctgcggcggcaatgtgattttttatattccggatcgcgaggcagaaggctac
ggcctgaacatggatgccgtcaaagccctgcatgacgaaggcgtttccttgattcttacg
gttgacaacgggatttcttccgtcgctgaagtggaatacgccgcaagcctcggcatcgac
acagttatcaccgaccatcacaggccgaaaagtgaactgccgaaggccgtcgctgtggtt
gacccatggcgagaagattgtacctgcccttaccgggattattccggtgcgggcgttgct
tttaagctgctgacggctctggaaggtccggaatttggagcggaagccctgctcgataat
tacgccgaccttgtcgccatcggtaccatcggcgatgtggtgccgcttaccggcgagaac
cgccagcttgtcagctccggactcatcgcgctttccaatggagaccgccctggccttgcg
gctttgctggagctttgcggaatggaccagcgtccgctcacagccatggatgttgcgtat
accattgttccgagaatcaatgccacagggcgcatgggagctgcagatcgcgccgtcagg
ctgcttacggcagactcgatggaagatgcggaaaatttggcagccgagatctgttcggaa
aacgcctcacgccgcaaaatcgaggacgaggtcctgcaggaagcgatgaactgcttccgc
gagaatccgtcgctgctgtatgaccgggttctagtcgtgtggggagaaaactggcaccac
ggcgtcatcggcattgtcgcggccaaaattaccgagcgtttcggcaagccatgtatcgtc
ctttcttgtaacgggaaagatgcgaaggggtcgggccgcagtgtcgagggattttccttg
ttcgatgcggtatgctcctgcgatgacctgctcacgaaatacggcgggcatcccatggcg
gcaggaatgtccctgcccgtttccaaccttgaagaattccggaaaagaatcaaccaatat
gcagcttcgctgcccgggcctatgcccgttccgcttttgcggattgactgcgttttgaaa
ccggagaaactttctgttgatataccgcaaagcctgcaaatgctggaaccgttcggaaca
ggcaatccgttcccgctgtttgggcttttcggcgtcgtcataacggacattacgcccgtc
ggtggaggaaaacatctgcgtttaacggtaaaaaaaggcaacacatccgtttcctgcatg
aaattcggcgtaacactggaacagttcgcttttcgtgtgggggataccgtcgaccttgct
gtggttttgaaagcaagaccgtacggaggacatttgactctttcggtcattgtacgggat
atccgattagccggaatggacgaggaagcgcttatctccggccgcgccctgtatgagaaa
gctctgcggggagaactgctttcccctgaggaaacggcagaacttctcccaacacgtgag
gtgttttcaacggtttaccgtgcactgcgggataacggcggcttttgcggagaaccggag
tatttcttcagccgcctttccggcgcgggcggatttgccgcatttctaactgcgcttgcc
gtttttcaagattgcgggctgattgaggaagaccgagaatccaatacataccgggtcagg
gttatgcggacaagcggaaaagtgaatcttgaggaatccccgcttttggtatcgctccat
tccgcggggaaagcaggtgaacagtaa
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