Thermocaproicibacter melissae: NOG13_08685
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Entry
NOG13_08685 CDS
T09029
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
tmel
Thermocaproicibacter melissae
Pathway
tmel03030
DNA replication
tmel03430
Mismatch repair
tmel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tmel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NOG13_08685
03430 Mismatch repair
NOG13_08685
03440 Homologous recombination
NOG13_08685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmel03032
]
NOG13_08685
03400 DNA repair and recombination proteins [BR:
tmel03400
]
NOG13_08685
Enzymes [BR:
tmel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NOG13_08685
DNA replication proteins [BR:
tmel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NOG13_08685
DNA repair and recombination proteins [BR:
tmel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NOG13_08685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
tRNA_anti_2
DNA_pol_IIIA_C
HROB
Motif
Other DBs
NCBI-ProteinID:
WBY64014
LinkDB
All DBs
Position
complement(1800911..1804417)
Genome browser
AA seq
1168 aa
AA seq
DB search
MFVHLHVHSEYSLLDGACRIKQLVDTAAERNMPAVAITDHGVMYGAIDFYKAAKARGIKP
IIGCEVYVAQRTRFDRVHELDSEHRHLVLLCENDTGYRNLIAMVSKSWTEGFYSKPRVDF
ELLEQYHEGLIALSACLAGEVARDLTAGDYEAAKQAALHYDSIFGRGNFYLELQDHGLRE
QKAINPSIIRIARETGIPLVVTNDCHYINPEDSEMHRILLCIQTNHTIEDKDGMEFGSDQ
FYFKTEEEMRALFPQLPEAADNTVKIAERCNVEFEFGKTKLPRFDTPTGEDNVAYFRRLC
MEGLIRRYGENPDQSIRDRLNYELETIEKMGYVNYYLIVHDFVRHAKEVGIPVGPGRGSG
AGSLAAYCIGITGIDPIRYNLLFERFLNPERVSMPDFDIDFADDRRPEMIDYVVNKYGSD
HVAQIVTFGTMAARGSIRDVGRAMAMSYAAVDEIAKLIPSELNITLDKALEASGELKQRY
DSDPQVKKLIDMARRLEGMPRNASTHAAGVVITDRPVSEYVPLAKNGDSVVTQYTMTALD
ELGLLKMDFLGLRNLSVIRRAQDMIEKREPGFRIENIPMDDHEVFEMLAAGTTDGVFQFE
SGGMRNVMVQLHPESIEDLIAVISLYRPGPMESIPRYLENRHHPDKITYRHPLLKDILSV
TNGCIVYQEQVMQIFRTLAGYSLGRADIVRRAMSKKKKDVMAREKEIFIHGLTDENGNVI
VEGCVRRGVDEATAEAIYGEMASFASYAFNKSHAAAYAVVSYQTAYLKCHYPREYMASLL
TSVLDNTNKLSTYIAECLRLGIRVLPPHVNESESGFTVAGKDIRFGLLAIRNLGRGFIDQ
LVAERKKNGPYTSFYDFCKRMFDGLNRRTLENLVKSGALDNLGLNRRQMLTSAESVLDTL
AENKKHNVEGQIGFFDAAQTNGQDEFKVPPMPELSMNDQLEMEKEATGMYLSGHPMAAYA
GRYAELQAVRIGDILEEAKEGSGSLRDGATVNVLGIITKVQLKVTKSNSTMAFVTLEDLY
GSIRVLVFPKSLTEYAGLIAEGKILKVSGRISVRDENEVELICQTVQEIPAAGQSGAAAQ
ESAHPNRRPGLYLKVRSKDDPGYRKAMQYIAIFDGATPLYIYFSESKKLMAAPLSMRVSV
NDVLLRELRKVLGEKNVAFVENMQQKSI
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtccatctccatgtgcacagtgaatacagcctgcttgacggcgcctgccgcatt
aaacagttggtagatactgctgcggagcgaaatatgcccgctgttgccattaccgaccac
ggcgtaatgtacggcgcgattgatttttacaaggctgcaaaagcccgcggcattaagccg
attatcggctgcgaagtctatgtggcacagcgcacgcgctttgaccgcgtccatgaactc
gattccgaacatcgccatctggtgctgctgtgcgaaaatgacaccggctaccggaacttg
attgccatggtgtcgaaatcttggacggaggggttctattccaagccgcgcgtcgatttt
gaactgcttgagcagtaccatgaaggtctcatagccctctcggcgtgcctagcgggtgag
gtcgcgcgcgacctcactgcaggggactatgaagccgcaaagcaggctgcccttcactat
gacagcattttcggcaggggcaatttctaccttgagctgcaggaccacggcctacgggaa
cagaaagcaatcaacccctccatcatccgcatcgcgcgcgaaacgggaattccgcttgtg
gtcacgaatgactgccactatatcaaccccgaagacagcgaaatgcaccgcattctgctt
tgcatccagacgaaccatactatcgaagacaaagacggcatggagttcggcagcgaccag
ttttacttcaagacggaagaagagatgcgcgccctgttcccgcagctgccggaggccgct
gacaacacagtgaaaattgccgagcgctgcaatgtggagtttgaattcggcaaaaccaag
ctgcctcgtttcgatacgcctacgggcgaagacaatgtcgcctattttcgccgcctttgc
atggaaggcctcatccgccgctacggagaaaatccagaccagtcgattcgcgacaggcta
aattacgagcttgaaacgattgagaagatggggtacgtcaactactacctcatcgtgcac
gattttgtccgccacgccaaagaagtcggtattcctgtcggccccggccgcggctcgggc
gctggcagccttgcggcttactgcattggaatcacgggcatagacccgattcgctacaat
ctgctgtttgaacgcttcctgaatccggagcgcgtcagtatgccggatttcgatatcgac
tttgcggatgaccgccgcccggaaatgattgattatgtggtgaacaaatacggcagcgac
catgtggcgcagattgtcacattcggcaccatggcggcaaggggctccatccgcgacgtc
ggcagggcgatggccatgtcgtacgcggcggtggatgaaattgccaagctgattccctcg
gagctaaatatcacgcttgataaagctttggaggcctccggggagctcaaacagcgttac
gactccgacccgcaggtgaaaaaactgattgacatggcgcgtcggctcgagggcatgccg
cgcaacgcctcgacccacgccgccggtgtggttatcaccgataggcctgtttcggaatat
gttccgcttgccaagaacggcgattccgttgtaacgcagtacaccatgacggctttggac
gagcttggcctgctgaaaatggacttcctcggcctgcgcaacctttcggttatccgcagg
gcgcaggatatgattgagaaacgggaaccgggcttccgcattgagaatatcccgatggac
gaccatgaagtctttgagatgcttgctgccggaacgacggacggcgtgttccagtttgaa
tccggcggaatgcgcaacgtgatggtgcagcttcacccggaaagcattgaagacctcatt
gccgttatttcgctttaccgccccggcccgatggaatccattccgcgctacctcgaaaac
cgccatcatccggacaaaatcacatatcgccatcctctcctgaaggatattctgagcgtt
acaaacggctgcatcgtctatcaggagcaagtgatgcagattttccgcacgctcgccggt
tattcgctcggccgtgccgatatcgtgcgccgcgctatgagcaagaagaaaaaagatgtt
atggcgcgtgaaaaggagattttcatccacggtctgacggatgagaacggaaatgtcatc
gttgaaggctgtgtgcgccgcggcgttgacgaagcgaccgccgaagccatttacggtgaa
atggcaagtttcgcttcgtatgcgttcaataagtcccacgctgcggcttacgccgttgtc
agttaccagacggcgtacctcaagtgccattatccgcgcgaatatatggcttcgctgctc
acaagcgtgctggataataccaataagctttccacttatattgccgaatgcctgcggctg
ggtattcgcgttcttcctccccatgtcaacgagagcgagagcggcttcactgtcgccgga
aaagatatccgcttcgggttgctcgccattcgcaatctcggcaggggctttatcgaccag
cttgtggcagagcgcaagaagaacggaccatatacttctttctacgatttttgcaagagg
atgtttgatgggctgaaccgccgcacactggagaaccttgtcaagagcggagcgctggac
aatctcgggttgaaccgccgccagatgctcacatcggcagagtccgtgctcgacaccctc
gccgagaataaaaagcataatgtagagggacaaatcggcttttttgatgcggcccaaacg
aacggacaggatgaattcaaggttccgcccatgccggaactcagcatgaacgaccagctc
gaaatggaaaaagaagcaaccggcatgtatctttccggccatccgatggcggcgtatgcc
ggcaggtatgcggagcttcaggcggtgcgcatcggcgatattctcgaggaagcaaaggaa
ggcagcggcagcctgcgcgacggagctaccgtgaatgtgctcggaatcatcaccaaagtc
cagctcaaggtgacgaagagcaacagcaccatggcctttgttacgctggaagacctctac
ggctcgattcgtgtgctcgttttcccgaaatcgctcacggaatacgccggattgattgcc
gaaggcaaaatcctgaaagtgtccgggcgcatcagtgtgcgggacgagaatgaggtggaa
ctcatctgccagaccgtgcaggaaattccggcagcggggcagagcggtgctgcggcgcag
gaaagcgctcatccgaacagacgcccggggctttatctgaaagtgcgcagcaaggacgac
ccgggttaccgcaaggcgatgcagtatatcgcgatctttgacggagcaactcctctgtat
atctatttttcggaatcgaaaaaactgatggcggcacctctctccatgcgcgtcagcgtc
aatgatgtccttctgcgggagcttcggaaggtcttgggcgagaaaaatgttgcctttgta
gagaacatgcaacaaaagtccatatag
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