Talaromyces marneffei: EYB26_001171
Help
Entry
EYB26_001171 CDS
T06392
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tmf
Talaromyces marneffei
Pathway
tmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYB26_001171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmf03019
]
EYB26_001171
03041 Spliceosome [BR:
tmf03041
]
EYB26_001171
03009 Ribosome biogenesis [BR:
tmf03009
]
EYB26_001171
03016 Transfer RNA biogenesis [BR:
tmf03016
]
EYB26_001171
Enzymes [BR:
tmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EYB26_001171
Messenger RNA biogenesis [BR:
tmf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
EYB26_001171
Spliceosome [BR:
tmf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
EYB26_001171
Complex C
U4/U6.U5 tri-SnRNP related factors
EYB26_001171
Ribosome biogenesis [BR:
tmf03009
]
Eukaryotic type
Pre-60S particles
Helicases
EYB26_001171
Transfer RNA biogenesis [BR:
tmf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
EYB26_001171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Helicase_dom4_arc
ATPase_2
VasI
AAA_16
Motif
Other DBs
NCBI-GeneID:
79161144
NCBI-ProteinID:
XP_054116457
LinkDB
All DBs
Position
1:complement(join(3124992..3125738,3125793..3126385,3126435..3127496,3127555..3128386))
Genome browser
AA seq
1077 aa
AA seq
DB search
MDDLFDVFEDKPGAYVSDDEPARSRPKKDKSKKRQANGDVKAKKQDSQPDEEVSPDAPAA
DTTANGADRQSEENAQPEAKRQRIQDEPAAVVADSFETEQEREVAASAGLQATQDTGAVV
LSHQVRHQVAIPPNYPYIPISQHVPPEEPARVWPFTLDPFQQTAVHSIQREESVLVSAHT
SAGKTVVAEYAIAQSLKKNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPTAT
CLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDATRGVVWEETIILLPDKVRYVFLS
ATIPNAMQFAEWIVNLHHQPCHVVYTDFRPTPLQHYFFPAGAEGIHLVVDEKGVFREDNF
QKAMSTIAENKGDDPANALANRKGKGKDKKFNKGANKGPSDIFKIVRMIMLRSYNPVIVF
SFSKRECEANALQMSKMAFNDDSEKEMVSKVFNSAIEMLSEEDRQLKQIQNLLPLLRRGI
GIHHGGLLPILKETIEILFQEGLLKVLFATETFSIGLNMPAKTVVFTSVRKFDGIDTRWV
TPSEFIQMSGRAGRRGLDERGIVIMMVGEEMEPSVAKEIVRGEQDRLNSAFHLGYNMILN
LIRVDGISPEFMLRKCFYQFQNTSSVAGLEKELAELETKRINMSIPDEPTIQDYYDLRKQ
LTRFTADMQEVITHPDYCLQFLQPGRLVHIMHQGNDLGWGAIVNYKQRRSKNPNEVLAPQ
ESYIVDVLLQVAEGSSTGTRTHTDLPAGIRPPKEGEKSHMQVVPVLLKCLQSISHVRIFL
PKEVQTVDSRASVKRSVDEIKKRFPDGLPLLDPIENMNITDDSFKKLMRKVEVLESRLLA
NPLHNSPRLPELYDQYSEKVELGVQIKDIKKKISDAMSVIQMDELKCRKRVLRRLDFINK
EDVVQLKARVACEISTGDELMLSELLFNGFFNNLTPEQIAAVLSCFVFEEKVKDAPALTR
DELSKPLKEIQSQARIIAKMSMESKLAVNEEEYVQSFHWELMDVIYEWAHGMSFAKICTM
TDVYEGSLIRVFRRLEELMRQMAQAAKVMGNDELEQKFETSLTKVRRDIVAAQSLYL
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atggatgacttattcgatgttttcgaagacaagcccggagcttacgtctcagacgatgag
cctgcaagatctcgaccaaagaaagacaaaagcaaaaagcggcaagcaaatggtgatgtg
aaggccaaaaagcaagactcacaacccgacgaggaagtctcaccagacgctccggctgcg
gatacaacggcgaatggcgcagatcgccaatccgaagaaaatgcccagccagaagcgaag
cgccaacgcattcaagatgagccggcagcagtcgtcgccgattccttcgaaaccgagcag
gaacgagaagtggctgcctcagctgggctacaagccacccaagatacaggtgccgtcgtg
ctctcgcatcaagtccgccaccaagtcgcaattccaccaaactatccgtacatacctatt
tcccaacatgtgcctcccgaggagcctgctagagtttggccgtttacccttgatcctttc
caacaaaccgccgttcattcgatacagagagaagagagtgttctggtttcggcccataca
agtgctggaaaaacggttgtagcagaatatgctattgcgcaaagtttgaagaagaaccag
agagtcatctatactagtcctatcaaggctttgagtaatcaaaagtaccgagagttcgca
gcagaattcggcgacgtgggtctgatgactggagatgttacaatcaatcccacagcaaca
tgtctcgtcatgactacggagattttgagatccatgctttatcgcggttcggaaatcatg
cgagaagtagcatgggtcgtgtttgacgaaattcactacatgcgtgacgcaactcgtggt
gtcgtttgggaagagactatcattctactcccagacaaggttcgctacgtcttcttgtcc
gccacgatccccaacgccatgcagttcgcagaatggattgtcaatttgcatcaccaacca
tgtcacgttgtttatactgatttccgacccacgccgttacaacattatttcttcccggct
ggtgcagaaggaattcacttggtggtcgatgaaaaaggtgttttccgggaagataacttt
cagaaagcaatgagcactattgccgaaaacaagggtgacgatccggcaaacgccttggcc
aatcgcaagggtaaaggcaaagacaagaagttcaacaagggagccaacaaggggccctcc
gatatcttcaagatcgtcaggatgatcatgttaagaagctacaaccccgtcatcgttttc
agtttcagcaagcgcgagtgtgaagcaaacgctttgcaaatgagtaaaatggccttcaac
gacgactctgagaaagaaatggtttccaaagtcttcaacagcgccattgagatgctctct
gaagaggaccgacagctgaaacaaatccagaaccttctacctctgttacgacgtggaatc
ggcatccatcacggaggtctactccccattttgaaggagaccatcgaaattttgttccaa
gagggtcttctcaaggtacttttcgccacggagacgttttctattggactgaacatgcct
gccaaaacagttgtctttacaagtgtacggaagttcgatggcattgatacacgctgggtt
acaccgtccgaatttattcagatgtcaggacgagctggtcgaagaggtctggacgaacgt
ggtatcgtgatcatgatggtcggtgaagaaatggagccctccgttgcgaaggagatcgtg
cgtggcgaacaagaccgactcaactctgctttccatttagggtacaacatgattctcaat
ttgatacgagttgacggtatttcccctgaattcatgctcaggaagtgcttctatcaattc
cagaatacatctagcgttgctggtttggagaaagaacttgcggagcttgagaccaaacgg
atcaacatgagcattccagacgaacccacaattcaggattactatgatttacgaaagcaa
ttgacaagatttactgctgatatgcaagaagttatcacccaccccgattactgtttacag
ttcctgcaaccaggacgtcttgtgcatatcatgcatcaaggtaatgaccttggctggggc
gccattgtaaactacaagcaacggagatcaaagaatcctaacgaagtcctcgcccctcaa
gagtcatatattgtggatgtcttgttgcaggttgcggaaggctcttcaacgggcactcgc
actcacaccgatctacctgctggtattcgaccaccaaaggagggcgaaaagagccatatg
caagtcgtaccggtgcttctaaagtgtctacaatctatatctcacgtccgaatcttcctc
cccaaagaggtgcaaacggtagactcgcgggctagcgtcaaacgttcagttgatgagatt
aagaagcgattcccggatggtctgcctctccttgatccgattgagaacatgaacatcacg
gatgactctttcaagaaactcatgaggaaagttgaggtgcttgaatcgcggctcttggcc
aaccctctgcataattcgccacgcttgccagaattgtacgaccaatattcggaaaaagtc
gaattaggcgtccaaatcaaggacatcaagaagaagatttccgacgctatgtcggttata
cagatggatgaattgaaatgccgaaagcgagttcttcggcgacttgacttcatcaacaaa
gaagacgttgtccagctcaaggctcgagtagcatgcgagatcagcactggtgatgaactc
atgctgagtgaactgttgttcaatggttttttcaacaaccttacacccgaacaaattgcg
gctgtcctgagttgctttgtctttgaagaaaaggtcaaggacgcacctgcattgactcgg
gatgagctaagcaagccgctcaaagaaatacagtctcaagctcggatcattgccaagatg
tccatggaatcgaaactagcagttaatgaggaagaatacgtacaaagcttccactgggag
cttatggatgtgatttatgagtgggctcacggcatgtcattcgcaaaaatctgtacgatg
acagacgtttacgaaggtagtttgattcgagtcttccgtcgtcttgaggaactgatgcga
cagatggcacaggctgccaaggtcatgggcaacgatgagcttgaacagaagttcgagaca
tctctcaccaaggttcgccgagatattgttgccgctcaatctctatacttgtaa
DBGET
integrated database retrieval system
