Talaromyces marneffei: EYB26_002868
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Entry
EYB26_002868 CDS
T06392
Name
(RefSeq) uncharacterized protein
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tmf
Talaromyces marneffei
Pathway
tmf03008
Ribosome biogenesis in eukaryotes
tmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
EYB26_002868
09123 Folding, sorting and degradation
03018 RNA degradation
EYB26_002868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmf03021
]
EYB26_002868
03019 Messenger RNA biogenesis [BR:
tmf03019
]
EYB26_002868
03009 Ribosome biogenesis [BR:
tmf03009
]
EYB26_002868
03016 Transfer RNA biogenesis [BR:
tmf03016
]
EYB26_002868
Transcription machinery [BR:
tmf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EYB26_002868
Messenger RNA biogenesis [BR:
tmf03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
EYB26_002868
Ribosome biogenesis [BR:
tmf03009
]
Eukaryotic type
Pre-60S particles
RNases
EYB26_002868
Transfer RNA biogenesis [BR:
tmf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
EYB26_002868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
UDPG_MGDP_dh_N
CBM_15
Motif
Other DBs
NCBI-GeneID:
79162841
NCBI-ProteinID:
XP_054118147
LinkDB
All DBs
Position
2:join(1412235..1412541,1412616..1412802,1412860..1412959,1413013..1414934,1415000..1415612)
Genome browser
AA seq
1042 aa
AA seq
DB search
MGVPALFRWLSNKYPKIISPVIEEQPYEVNGEVIPVDTTKPNPNGEETDNLYLDMNGIVH
PCTHPEGKPPPANEQEMMLEIFRYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRFR
SAQEARENDQKKEEFQKLLVKQNAAKGIDPDKDIKEQVIQKTWDSNVITPGTPFMDILSA
SLRYWISYKLNTDPAWEKMKIIISDATVPGEGEHKVMNFIRSQRQDPSHDPNTRHVLYGL
DADLIMLGLATHEPHFRVLREDVFFQESRPRTCRLCGQPGHKAEECRGEAKEKNGEFDEK
QKAAPLKPFIWLNVSVLREYLAVELQVPQQRFPFDLERALDDWVFMCFFVGNDFLPHLPS
LDIKENAIDLLISIWRENIPLMDDYVTKDGIVNFNHAQLILNGLGKQEDGIFRRRRQAEE
RKAANEQRRKEEEKARNAERSQKRRRSSPDYTAGEAGLSAPPAKGRKSGEGFIASTEVTL
ITPSRGHLDKETRQLTHSMVVNRSAIYKANEANKSAAAALKSQLLKGKVPTNAETETTNS
EIPSGEEESLETSPSVLGKRKVEDLTDADNGTPGRDSPVAAGPAKPSDELPPDTVRLWES
GYTERYYEQKFHVDPSNVEFRYQVARSYAEGLQWVLLYYMQGCPSWTWYYPYHYAPFAAD
FVDIGSMKPSFEKGKPFRPFEQLMGVLPASSNHAIPEIFHDLMSDPNSEIIDFYPEDFPV
DLNGKKFAWQGVVLLPFIDETRLLAAMEKKYPLLSADEHARNTVGTDVLLISDQHPLYQE
LAANFYSKKQSTSKFALDMRVSEGLAGKVERDDNHIPHSSLDPPYDVDMPSLDENRSMMV
NYEIPKSTHLHKSMLLRGVRFAPPALDQGDISAVRNKSRFNGRGGFRPNNGGGRGGNQYN
QYNAPRPGMNDRANPFAAHLDPSFVPPPQGGASGWAPPAGGSGYSRGPPPPPRGGSHGYQ
NQPQGYNQSGYYGQDNSYQRGQNQYNYSAPPADYNQQGYYNAQRGGGGNRGDSRGYNNNR
GGYQSQSRGGYNSRRSDGYDRY
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccggctcttttccgttggctctccaacaaatacccaaaaatcatctctccc
gtcatagaggagcaaccatacgaagtcaatggcgaagtgattcccgttgatacgaccaag
ccaaatcccaatggcgaggaaacggacaacttgtacctggatatgaatggtattgtccat
ccgtgtacacatcccgagggcaagcccccgccagcaaacgagcaggagatgatgctggag
atctttcgttacaccgatcgagtggtgaacatggttcgcccgaggaagcttttgatgatc
gcagttgatggtgtcgcaccccgtgcgaagatgaaccaacaacgctctcgacgattccgc
tctgcgcaagaagctagggagaacgatcaaaaaaaggaagaatttcaaaaactgctggtc
aaacaaaatgctgctaagggaattgatccggacaaagatatcaaggaacaggtcattcag
aaaacatgggatagtaatgtgattactcccggtactccgttcatggatatcctctccgca
tctctacgttactggatttcttacaagctgaacaccgaccccgcatgggaaaagatgaaa
atcatcattagtgatgccaccgttcccggagagggcgaacacaaggttatgaattttatt
cggtctcaacgacaggatcccagtcacgatccgaatactcgccacgtcctgtatggattg
gatgcagacttgattatgcttggtcttgcaactcatgaaccacatttccgagttctgcgt
gaagacgttttctttcaggagtcgaggcccagaacatgccgcctttgtggccaacctggt
cataaagccgaggaatgtagaggcgaggccaaagagaagaatggcgagttcgatgagaaa
cagaaagctgcgcctctgaagcctttcatctggctaaacgtttccgtgcttagggagtat
cttgctgttgagctccaagttccccagcagcgattcccgtttgacttggaacgagccctg
gatgattgggtgttcatgtgtttcttcgtcggaaacgatttcttgccccatcttccttct
ctggatattaaggaaaatgcaattgacctgttgatttctatttggagagaaaacattcca
ctcatggacgattatgtcacgaaggacggtattgtcaacttcaaccacgcccaactcatc
ctgaatggcctgggtaagcaagaagatggaattttcagaagaagaagacaagcggaagaa
agaaaggctgccaatgaacagcgtaggaaggaagaagaaaaagcacgcaatgcagaacga
tcacagaagcgccggagaagctcgccagattatacagccggggaggcaggtctctctgct
ccaccagccaaaggtcggaagtcaggagagggtttcatcgcgtcaacagaagtgacatta
atcactccaagccgaggacacctcgacaaagagacaaggcaattgacacacagcatggtt
gttaatcgatcggccatttacaaagctaatgaggcgaacaagagtgctgctgctgcgttg
aaaagccagttactgaaaggaaaagtgccaaccaatgctgaaactgagactaccaatagt
gagatcccaagtggagaagaggaatcattggaaacttcgccgtccgttttgggcaagaga
aaggtcgaggatctaactgatgcggataatgggacacccggcagagactcgccagtagca
gctggacccgcaaagccgtcagatgagttacctccagacacagtacggttatgggagtct
gggtataccgaaaggtactacgaacaaaagttccatgtcgatcctagtaatgtcgagttc
cgctatcaggttgcaagatcatatgccgaaggtctgcaatgggtccttctctactacatg
caaggatgtccttcttggacctggtactacccgtaccattatgcaccttttgctgcagac
tttgttgatattggtagtatgaaaccaagctttgagaaaggcaaaccgtttcggcctttt
gaacaactgatgggagttctaccagcatcgtcaaatcatgctattccggaaattttccat
gatttgatgtcggatccgaacagcgagatcatcgatttctatccggaagatttccccgtc
gatctgaacggcaagaaatttgcatggcaaggagttgttttacttccattcatcgatgaa
actagactactcgctgcaatggagaagaaatacccattgttgagtgcagatgagcacgcc
cgtaacacagttggtactgatgttctcctaatttccgaccaacatccgttgtatcaggaa
cttgcagcaaatttctacagtaaaaagcagagcacatcgaagttcgctctggacatgcgt
gttagtgaaggattggcagggaaggtagaacgggacgacaatcacattcctcacagctct
cttgaccctccttatgatgttgatatgccatctctagatgagaacaggtctatgatggtc
aactacgagattccaaagtcaacccatctacacaaatccatgctccttcggggagtgcga
tttgcacctccagccctagatcaaggagatatctctgctgttcgaaataaatctcgattc
aacggacggggaggtttcaggcccaacaatggtggcggcagaggcggtaatcaatacaac
cagtacaacgctccaaggccaggcatgaacgaccgagcgaacccatttgcagcgcatttg
gacccatcctttgtccctccgcctcagggcggagctagtggatgggctcctcctgcaggt
ggttctggttactctcgcggccctccacctcccccacgcggtggcagtcatggttatcag
aaccagccacagggctacaatcagtccggttactatggtcaagacaacagctaccagcgt
ggtcagaatcagtataactactcggctcctcctgcggactataaccagcaaggatattac
aatgcgcaacgaggcggtggcggtaatcgaggagactcaagaggctacaacaacaacaga
ggtggctaccaatctcagagccgtggcgggtacaactctaggcgtagcgatggctacgat
cgatactag
DBGET
integrated database retrieval system
