KEGG   Talaromyces marneffei: EYB26_003341
Entry
EYB26_003341      CDS       T06392                                 
Name
(RefSeq) uncharacterized protein
  KO
K12601  superkiller protein 8
Organism
tmf  Talaromyces marneffei
Pathway
tmf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tmf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EYB26_003341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tmf03019]
    EYB26_003341
Messenger RNA biogenesis [BR:tmf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     EYB26_003341
SSDB
Motif
Pfam: WD40_WDHD1_1st Beta-prop_EML_2 WD40 WD40_CDC20-Fz WD40_Prp19 EIF3I ANAPC4_WD40 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_Vps41 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_IFT140_2nd Beta-prop_WDR75_1st eIF2A Beta-prop_Nup120_160 WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 WDR54 Beta-prop_DCAF12 RMC1_N WD40_like Cytochrom_D1 DUF7165 Beta-prop_NWD2_C VID27 B-prop_COPA_B_2nd Beta-prop_IFT122_2nd Mala_s_1-like Beta-prop_RIG_1st PROPPIN
Other DBs
NCBI-GeneID: 79163314
NCBI-ProteinID: XP_054118617
LinkDB
Position
2:complement(join(2723189..2723372,2723432..2723618,2723680..2723773,2723829..2723992,2724067..2724327,2724401..2724437,2724493..2724495))
AA seq 309 aa
MSKQYLSWGSADNAHPIDIFSLAVTSNQIISASGASALKIHSTADTDFPLAQTIEAAHKI
GCHHVVTSRNGLKAASIGFGGEFKIWNNNNGDWSEEVALSNAIKEPDTWAICLSEDGRYL
AGTTNNGHIKVWDLSNGEQFRDYETKGAFGACIDMSNDGKYIASGHQNGSIYMFSNETGR
MPFSLSGLIKPVRAVAFSPGGKLLAAAGDSKVIVLYDTESGEQVTQLTGHSAWILSLDWS
HTGEYLLSASFDGKVKVWSVERRACVATHSENDKAVWSAKWLPKIGRTEGFATAGASRSI
SFYREATGG
NT seq 930 nt   +upstreamnt  +downstreamnt
atgtccaaacaatatctttcgtggggctctgcggacaatgcccacccgattgatattttt
tcactggctgtgacttccaaccagatcatctcagcttcaggagcatctgcgctcaagata
cactctactgcagacacggattttccgcttgctcaaaccattgaagctgcgcacaagatt
ggatgccaccatgtcgtcacatcaaggaatggcctgaaagccgcaagcattggcttcggg
ggtgaattcaagatctggaacaacaataatggagactggtccgaagaggtagctctatca
aacgcaataaaagaaccagacacttgggcaatttgtttatcagaagatggccgatacctt
gcagggacgacaaataatggccatatcaaggtctgggacctaagcaatggcgaacagttc
agagactacgaaaccaaaggtgcctttggtgcttgtattgacatgtcaaatgatggaaaa
tacatagcaagcggccaccagaacggtagtatctacatgtttagcaacgaaactggtcgt
atgccattctcattatccggtcttattaaaccagttcgcgcggttgcattctcaccaggc
ggaaagctgcttgcagcagctggggactccaaagtcattgtactctatgacacagaatcc
ggtgaacaagtgactcaactgaccggccattcggcgtggattctatcactagactggagt
catactggagagtatttgttaagcgcatcgttcgatggcaaggtcaaagtatggtctgtt
gaacgtcgagcatgtgttgcgactcattctgagaacgacaaagctgtatggagtgcaaaa
tggttgcccaagataggcagaacggaaggatttgcgactgctggtgcttctcgcagtata
tccttttacagagaagctacaggcggctag

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