Talaromyces marneffei: EYB26_004272
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Entry
EYB26_004272 CDS
T06392
Name
(RefSeq) uncharacterized protein
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tmf
Talaromyces marneffei
Pathway
tmf03008
Ribosome biogenesis in eukaryotes
tmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
EYB26_004272
09123 Folding, sorting and degradation
03018 RNA degradation
EYB26_004272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmf03019
]
EYB26_004272
03009 Ribosome biogenesis [BR:
tmf03009
]
EYB26_004272
03016 Transfer RNA biogenesis [BR:
tmf03016
]
EYB26_004272
03036 Chromosome and associated proteins [BR:
tmf03036
]
EYB26_004272
Messenger RNA biogenesis [BR:
tmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
EYB26_004272
mRNA degradation factors
5'-3' decay
5' exonucleases
EYB26_004272
Ribosome biogenesis [BR:
tmf03009
]
Eukaryotic type
Pre-60S particles
RNases
EYB26_004272
Transfer RNA biogenesis [BR:
tmf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
EYB26_004272
Chromosome and associated proteins [BR:
tmf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
EYB26_004272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
SWIRM-assoc_2
Motif
Other DBs
NCBI-GeneID:
79164245
NCBI-ProteinID:
XP_054119541
LinkDB
All DBs
Position
3:complement(join(1466761..1469300,1469357..1471076))
Genome browser
AA seq
1419 aa
AA seq
DB search
MGVPKFFRWLSERYPSISQLIAENRIPEFDNLYFDMNGIIHNCTHSDSDSPTHRMSEDQM
FIAIFNYIEHLYGKIKPKKLFFMAIDGVAPRAKMNQQRARRFRSALDAEVAKEKAIAQGI
EMPKEDAFDSNCITPGTEFMARLTKQLKYFISKKISEDVEWQGVEIVLSGHEVPGEGEHK
IMEYIRQAKAQPGYDPNVRHCLYGLDADLIMLGLLSHDPYFCLLREEVTFGRQAQKKSKE
LEHQNFYLLHLCIVREYLELEFQELQLTTKSGFVYDMERIIDDFILMAFFVGNDFLPNLP
HMHINEGALALMFTKYKEALPKMGGYINEYGSINLQRLGILLDHLSEFEFRFFEAEYSDA
KWIRSKTSSSEVMESNDSQKSFTITPSQKKLLKDIKQYVLNRPSNIQHAKPLDLSPTLLA
RDRKFVEQLADDLRLMWTTITDDHGERFIRLQLPGSTIATKAEGDAEESEESEDEEASMA
LRRVIKRYENAKVHEQTAEEAQMAAEQKYEQKFQEWKNKYYMEKFGHGLEDEAAMTKLTE
NYVQGLQWVLFYYYRGVVSWPWYFQYHYAPMISDVKKGLGANIDFKLGQPFRPFQQLMGV
LPDRSKKIVPTAYWDLMTSPESPIIDFYPRDFELDMNGKKMEWEAVVKIPFIDEARLLPA
MATREHLLTPEERARNEFGVTLKFTYSPSIEFTYPSSLPGIFPDIPNCHCIENIYDLPTM
DGLEHYVGLVDGVKLGAAALAGFPTLKTLPHAGQLAFHGVNVFQQDSRKESMVITLLGPE
ARSNVELAKEKLGQRIYVGYPFLQEALVVRVSDELFDYILPEGEQHVVSIPHSPPQIEQW
TRKSDKIEAYYSKRLGMIIGPVESMIHVQLLRGLRKNDDGATVKEFADIPGQETDYALQL
VVDRVISEDQRFLERGAVSIEEEFPEGSKAFFLGEFNYGAPVQVTSHEDGKVHGMMIAVK
GKEPEFGKQHVKQAEKLSPYTPSFAIARNLRLNALVLAKITSSFSVTIDGQRANLGLNLK
FEARKLKVLGYSRRGESGWEFSNKAIDLIQQYMIKFPDFIAGIQRNPQGDKYEPTDFYPE
EIAMDKIKEIKAWLKSVESKHLERVPLDAEQLDSDVVKLIEADADRLTQTQSASEIKKIK
SVPRQALLKPADVEHRLGHQRFSLGDRVVYAQDSGKVPLATRGTVVGLTRTPRTVFLDVV
FDAPFMSGTTLGDRCSPFRGQTVPISSVLNLTDRQLVAGTRAATNKKAQKTPANVGYGSP
LGPGGLGQLREAAAPAPLRGSYRGAVSGQPNGRGAHISRVGRGAVNGTPAQSGHPHVNAN
GLQNGQNFRGTRGRGRGGASRGQQQTRGGYTSVENGHQDEGVVQNNPNFRPKSYNNVPPP
AGLNNGTGRGRPNGNRGGNAPGGRGRGSARGRKPAQAAE
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccccaaattctttcgatggctcagcgagcgctatccctcgatatcgcagttg
atcgccgagaatcgcattcccgaattcgacaatctctactttgatatgaatggaattatc
cacaactgcacacacagtgattcagactcgccgacgcatcggatgtccgaagaccaaatg
tttattgccattttcaactacattgagcatttatacggcaaaataaaacctaaaaagctc
ttcttcatggccatcgacggagtagccccacgtgcaaaaatgaaccagcaacgcgctcga
cgatttcgttctgcgctcgatgccgaagttgcaaaggaaaaagcgatcgctcagggtatc
gaaatgccaaaggaggacgcatttgatagcaattgtatcactccggggactgaattcatg
gctcgattaaccaagcagctaaaatacttcattagcaagaagatctccgaggacgtggaa
tggcaaggtgtagaaatcgttctttccggccatgaagtgcccggagaaggtgaacataaa
atcatggaatacatccggcaggcgaaagcccagccgggttatgatccaaatgtgcgccat
tgcttgtacggattggatgcagatctaatcatgcttgggcttcttagccacgacccgtat
ttctgtctactacgtgaagaggtcacatttggaaggcaggcacagaaaaaatcgaaggag
ctggaacatcaaaacttctatctattgcatctttgcattgttagggagtatctggaattg
gagtttcaggaactgcaattgaccacaaaatctggtttcgtttatgacatggaacgaatc
attgacgactttattctcatggctttctttgttggaaacgactttttaccaaatttacca
cacatgcacatcaacgaaggtgcgctcgcattgatgttcaccaagtacaaggaggcgctt
cccaagatgggaggttatatcaacgagtatggaagtatcaacctgcaacgactaggcatt
cttctggaccatctttcagaattcgagttccgcttcttcgaagctgagtattcggatgcg
aaatggattcgctcgaaaacttcgagcagcgaggtaatggagtcaaatgacagccagaag
tcgtttacaataacaccttcacaaaagaagcttctcaaagatatcaaacagtatgttttg
aatcgaccatctaacatccagcacgcgaaaccgctggacctttcaccgacccttctcgca
agagatcgcaaatttgttgaacaactcgcagatgacctacgattgatgtggacgactata
acagatgaccatggcgaacgctttatcagacttcaactgccaggttccacgattgctacc
aaagctgagggcgacgctgaggagtccgaggagtccgaggatgaagaagcttccatggcg
cttcgacgagtgatcaagcgatatgagaatgccaaggttcacgagcagaccgctgaagaa
gctcagatggctgccgaacagaagtatgaacagaaattccaggaatggaagaacaaatat
tacatggagaagttcggccatggtctggaagacgaagcggcaatgacaaagttaacggag
aactacgtgcaaggcctacagtgggttttgttctattactatcgtggtgttgtttcctgg
ccgtggtatttccaataccactatgcgcctatgatttccgatgtgaaaaaaggccttggt
gcaaatattgatttcaagcttggacaacctttccgcccattccaacagcttatgggcgtg
ttacctgaccgcagcaaaaagatcgttcccactgcttattgggacctcatgacatccccc
gagtcacctatcattgacttctatcctcgtgactttgagctcgatatgaatggcaagaaa
atggaatgggaggctgtcgttaaaattccctttatagatgaggctcgtttacttcctgct
atggccacccgagagcatctcttaaccccggaagagagagcaagaaacgaatttggcgtc
acgttgaagttcacctactctccgtctattgaattcacctacccttcatcgcttcctgga
atcttcccggatattcctaattgccattgtatcgagaacatatatgatcttccaactatg
gatgggcttgagcattatgttggacttgttgatggtgttaagctcggtgcagcagctttg
gcaggatttcctactctaaagacgttgccacatgccgggcaactggccttccatggcgtc
aatgtcttccagcaggacagtcgcaaggagagtatggtcattacattactcggaccagaa
gcgagatccaacgttgagttggccaaggagaagcttggacaacgtatctatgttggttat
ccattcttacaggaagcccttgtcgttcgagtgtcggatgaattgtttgattacatcttg
ccagaaggagagcagcatgttgtctcgataccacactctccacctcaaatagagcagtgg
actcgaaagtcagataaaattgaggcttactatagtaaacgccttggaatgatcattggc
cctgttgaatcaatgatccatgttcagctgctcagaggtctgagaaagaacgatgatggt
gcgacagtcaaggagtttgcagacattcctgggcaggaaacagattatgctctgcagctt
gtcgttgatcgggttatcagtgaggatcaaaggttcctcgagagaggggcggtgtctatt
gaagaagagtttcctgagggttcgaaggcgttcttcctcggagagtttaattacggagcc
ccagtgcaggtcacttctcatgaagatggaaaagtccatgggatgatgattgccgtcaag
ggcaaggagcctgaattcggcaaacaacacgttaagcaggcagagaaactctcgccctat
acgccctcgtttgcaattgcgagaaaccttcgtttgaacgctctcgtcttggcaaaaatt
acatcctcgttctccgtgacgattgatggccagagggccaatcttggcttgaatctgaaa
tttgaagctcgcaaactcaaagttctaggctactcccgccgaggggaaagtggatgggaa
tttagtaataaggcaattgacctaatccagcaatatatgatcaaattcccagattttatt
gccggtattcaacgcaacccacaaggggacaaatacgagcccacagacttctacccggag
gaaattgcgatggacaagataaaagagatcaaagcttggttgaagtctgtcgaatccaaa
catctggagcgggtccctcttgatgctgaacaactcgattctgatgttgtgaaactcatt
gaggctgatgcagatcgcttaacacaaacgcagtcagcgtctgaaatcaagaaaataaaa
agtgttcctcgacaggcactattgaaaccagctgatgttgaacatcgacttggacaccag
cgattctccctcggagatcgcgttgtctatgcccaagattctggaaaggttcctcttgct
actcgaggaaccgttgttggtctgactcgcactcctcgaacagtgtttcttgacgttgtg
ttcgatgcacctttcatgagtggaaccacactgggtgaccgctgctctccgttccgaggg
caaactgtacccatatcttctgtccttaacctgaccgatcgacagcttgtggctggcaca
cgggctgcaaccaataagaaggcacaaaagacaccagcgaatgtaggctatgggtcacca
ctgggacctggcggcttgggccagttaagggaagctgcggcccctgccccattacgagga
tcatatcgtggtgccgtctctgggcagccaaatgggcggggcgcccatatctcacgggtt
ggccgtggtgctgtgaatggaacccctgctcagtccggacaccctcatgttaacgcaaat
ggtctgcaaaatggtcaaaacttccgcgggacaagaggacgcggacgtggtggcgcttct
cgtggacaacagcagactcgaggaggctatacctccgtggaaaacggccatcaagatgaa
ggagtggttcaaaacaacccgaactttcgaccaaaaagctacaacaacgtgccgccccca
gctggcttgaataatggaacgggacggggaaggcccaatggaaatcgtggaggaaacgcc
cctggtggtcgaggtagaggttcggccagaggaaggaaacctgcgcaagccgctgagtag
DBGET
integrated database retrieval system
