Talaromyces marneffei: EYB26_004740
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Entry
EYB26_004740 CDS
T06392
Name
(RefSeq) uncharacterized protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tmf
Talaromyces marneffei
Pathway
tmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYB26_004740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmf03019
]
EYB26_004740
Enzymes [BR:
tmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EYB26_004740
Messenger RNA biogenesis [BR:
tmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
EYB26_004740
mRNA degradation factors
3'-5' decay
Ski complex
EYB26_004740
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4-like_stalk
MTR4_beta-barrel
DEXQc_Suv3
ResIII
Helicase_C
Ski2_beta-barrel
Motif
Other DBs
NCBI-GeneID:
79164713
NCBI-ProteinID:
XP_054120006
LinkDB
All DBs
Position
3:complement(join(2754084..2754584,2754639..2754818,2754878..2755065,2755124..2755400,2755456..2757982,2758047..2758279))
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AA seq
1301 aa
AA seq
DB search
MVDILSSKLSQLRLSSDKLDAANYDARLIEEEDGIIDSSRSRKKIRRHNEDDLKKELEDE
FLTPSPRFSPDWLNRLQKRWDVSIDYQDIFDVAHTQTRTIIRFNREGLEGRVTGYHEMTV
PASSATAKNSTSLLRRPAARADFVRGAAGFFPFAPGGLDGVEAIAEMESEMQASEQQRGM
GKQGLDRIINFGTEGGLLEIPPGFTRGLNLKQAESKTAKEDDEEVEKTLDQEEAIKVERP
EIDGNAEEYKEGEEEMVSEEEEEEEEEEDIDSLLPVEFPAFEPRSQLFAATAQKGGREWA
HVVDVNKEISNFHDLVPNMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEY
AIALAVKHMTKAIYTSPIKALSNQKFRDFRNEFDDVGILTGDVQISPESSCLIMTTEILR
SMLYRGADLIRDVEFVIFDEVHYVNDMERGVVWEEVIIMLPEHVTLILLSATVPNTYEFA
SWVGRTKKKDIYVISTSKRPVPLEHYLWSGKSMHKIVDSNKRFIEKGWKEADDILSGRDK
QKAQKAAEAQAQSQAARGGQQGRGRGQANARGGPRGGGQARGGPQGGPGGRGRGQPANRG
TGNIARTGRGGGRTTAAQDRNVWVHLVQHLRKENLLPACVFVFSKKRCEENANSLSNQDF
CTATEKSAIHMIIEKSLARLKPEDRVLPQILRLRELLSRGVAVHHGGLLPIMKEIVEILF
ARTLVKVLFATETFAMGLNLPTRTVVFSGFRKHDGKGFRDLLPGEYTQMAGRAGRRGLDT
VGFVIIVASGKDEAPPAGALRRMMLGDPTKLRSQFRLTYNMILNLLRVEALKIEEMIKRS
FSENATQALLPEHEKQVQLSEASLSKIKREPCAYCDVDLAVCHQASVEYEKLTRDLHLGL
ITSPVGKRLFMIKRLVVYRKDGIRTAGLIVREGISGGEPNIQVLEIGAVSDKRHPSDILP
FLPSFRRFFRNLPTSSADMSLKVCRVALADVECVTNTFVKVTGPIWYLNIKKESLKFGDK
ELSKYCASWDSPFWDELDWDRVKELQIREILIKRQEQAAIAQGCHCLSCPDFLKHFEMQH
DEWQVKENISQLRQLMSDQNLQLLPDYEQRVEVLKELGFVDAESRVMLKGKVACEIHSAD
ELVLTELVLENVLAEYEPEEIVALLSAFVFQEKTENEPTLTPRLEKGKEAIIRIADKVND
FQILHQVILSSEDSNDFTSKPRFGLMEVVYEWAKGMSFNRITDLTDVMEGTIVRTITRLD
ETCREVKNAAKLVGDPTLYLKMQQAQELIKRDVIFAASLYM
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggtagatattctatcctcaaagctgagtcagcttcgtctgagctcagacaaactggat
gccgcaaactatgatgcacgactcatcgaagaagaagatgggatcatagacagctctagg
tctcggaagaaaattcgccgccacaatgaggacgatctgaagaaggaattggaggatgag
tttcttaccccttcaccgcgatttagcccagattggctgaatagactacagaagagatgg
gatgtgtctattgattatcaagacattttcgacgtggcacacactcagacccgcactatc
attcgcttcaaccgcgaaggcctcgagggccgagtgacgggttaccatgaaatgacggta
cccgccagcagcgctacagcaaagaattcgacctcgttattgagacgtccagcggcccga
gcagattttgtccgaggtgctgctgggttctttccctttgctcccggaggactggacgga
gttgaggctattgctgaaatggaatctgaaatgcaagctagtgaacagcagcgaggcatg
ggaaagcaaggactcgaccgcattatcaatttcggcactgaaggaggattgctagaaatc
ccaccagggttcacacgaggactcaatttgaaacaagccgaatcaaagacagcgaaagaa
gatgatgaagaagtggaaaaaactctggaccaagaagaagccatcaaggttgaacgtcct
gaaatcgatggaaacgccgaggaatacaaagaaggtgaagaggaaatggtaagcgaggaa
gaggaggaggaggaagaagaagaagatatcgattccttgctaccagtggaatttcctgct
ttcgaacccagaagtcagctatttgcagctacagcacagaaaggtggtcgcgaatgggca
catgttgttgatgtcaacaaagaaatctccaatttccatgatctggtacccaacatggcg
agggagtggccatttgagctcgatacttttcagaaagaagcagtctatcatttggagaac
ggagactcggtatttgtcgccgcgcatacttctgctggtaagacggtggtagcagaatat
gctatagcccttgctgtcaaacacatgaccaaggcaatctacacatcgcctattaaggcc
ctcagtaatcaaaagttccgagactttcgaaacgaatttgacgatgtcggtattctgact
ggtgacgtccaaatatcgccagagtccagctgtctcatcatgactactgagattctgcga
agcatgctttacagaggagcagatctcattcgtgacgtcgagtttgtgatttttgatgag
gtgcattatgtcaatgacatggaaagaggtgttgtctgggaagaggttatcatcatgctt
ccagagcacgtcactttgattctattatccgctacggtaccgaacacctatgaattcgcc
tcgtgggttggacgcacgaagaagaaggatatttatgttatttccacttcaaaacgtcca
gtgccgctagagcactatctctggtcaggaaagagcatgcataagattgtggattctaac
aaacgtttcatcgagaagggctggaaggaagctgacgatattctttctggacgggacaag
caaaaagcacaaaaggccgccgaggcacaggctcagtcccaggccgcgcgaggtggtcag
cagggtagaggccggggtcaagccaatgctagaggaggtccacgaggtggtggccaagca
cgaggcggccctcaaggcggaccaggtgggcgaggaagagggcagcctgctaatcgagga
acggggaatattgctcgaacgggacgaggaggaggaaggaccacggctgcacaagaccga
aatgtgtgggttcatctggtacaacatctacgcaaggagaatctgctgcccgcctgtgtc
tttgttttctctaaaaagcgatgtgaggaaaacgcaaactctctctcgaatcaagatttc
tgtacagcaacagaaaagagtgctattcacatgataattgagaaatccttggcgcggctg
aagccagaagacagggtcttgccacagattttgcgcctacgagagctgctgagtcgaggc
gtagctgtgcaccatggaggtcttttgccaatcatgaaagaaattgtcgagattctcttt
gctaggaccttagtcaaggttctctttgccacggaaacatttgccatgggtttgaacctg
cccactcgaacagtggtgttctcgggtttccgcaaacatgatggcaagggcttcagagat
cttctaccaggcgagtatacccagatggcaggacgagctggtcgaagaggactggacact
gtaggatttgtgattatcgtcgccagcggtaaagatgaagcaccgcctgctggtgcctta
cgacgcatgatgctcggtgatcctactaaacttaggtcacaattccgtctgacgtacaac
atgattctcaaccttttacgtgttgaggctcttaagatcgaagagatgatcaagcgaagt
ttcagtgagaatgcgactcaagctcttctgccggagcatgagaaacaggtgcaattatcc
gaagcaagtctttccaagatcaaacgcgagccttgtgcctattgcgatgttgatcttgcg
gtttgtcatcaagcctcggtggaatacgagaaactgacccgagacctacatttgggcttg
attacgtcgccagttggaaagagactttttatgatcaagaggcttgtggtatatagaaag
gacggaattcgtaccgccggtctcattgttcgtgaaggtatcagtggtggagagccaaat
atccaagtattggagattggtgccgttagcgacaagcgacacccaagcgacatattgcca
ttccttccaagcttccgacgatttttccgaaacctgcctacaagctctgccgacatgtcc
ctgaaggtttgccgggttgctttggctgatgtagaatgcgtgaccaacacctttgtcaaa
gttacagggccgatatggtacctcaatatcaagaaagaatcactcaagtttggcgataag
gaattatcaaaatactgtgcatcatgggatagtcctttctgggatgaactcgactgggat
cgtgtaaaggaacttcaaatccgcgagatattgatcaagagacaagagcaggctgcaatt
gcacagggctgtcactgtctctcatgcccagatttccttaaacatttcgaaatgcagcac
gacgaatggcaggtcaaagagaatatttcgcaacttcgtcaacttatgtcagaccagaac
ctgcagttgctacctgactacgaacagagggttgaagttctcaaggagctcggattcgtg
gatgccgagtcgcgggtaatgttaaagggaaaagttgcttgtgagatacattctgcggac
gagctggttcttactgaactcgttcttgaaaatgtactggcagagtacgagccagaggaa
atcgtggctcttctgtctgcattcgtgttccaagagaagacggaaaatgaaccgacactg
acgccccgcctggagaaaggcaaagaagctattatccggattgcggacaaggttaatgac
ttccaaatcctgcatcaagtcatcctgtcgagcgaagactccaatgatttcactagcaaa
ccccgatttggtctaatggaggtcgtgtacgaatgggcgaaaggcatgtcattcaaccga
attaccgatctcacagatgtcatggaaggcacgattgttcgaaccatcactcggctggat
gaaacgtgcagagaggtcaagaatgcggcaaaactagttggcgatccgacgctttatctc
aagatgcagcaagcgcaagaattgatcaagcgcgatgtcatctttgcagcgtctctgtat
atgtag
DBGET
integrated database retrieval system
