Talaromyces marneffei: EYB26_006928
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Entry
EYB26_006928 CDS
T06392
Name
(RefSeq) uncharacterized protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tmf
Talaromyces marneffei
Pathway
tmf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tmf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
EYB26_006928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmf03021
]
EYB26_006928
03019 Messenger RNA biogenesis [BR:
tmf03019
]
EYB26_006928
Transcription machinery [BR:
tmf03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
EYB26_006928
Messenger RNA biogenesis [BR:
tmf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
EYB26_006928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pcf11_C
Pfc11_Clp1_ID
CID
zf_PCFS4
DUF7340
VHS
Zn_ribbon_ISL3
UBZ_FAAP20
Motif
Other DBs
NCBI-GeneID:
79166901
NCBI-ProteinID:
XP_054122176
LinkDB
All DBs
Position
5:join(1675241..1675408,1675528..1675983,1676044..1676720,1676773..1676968,1677025..1677396,1677450..1677500)
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AA seq
639 aa
AA seq
DB search
MSSGLPSDEVAEDYKNSLEDLTTNDKFQISNLTVIAKENTEHAMAISRVLENHIRTTPPS
QKLPALYVVDSVVKNVGTPYTLFLGRNLYQTFMNAYTLVDQQTRRKLDEMLKTWKEPVPG
SLDPRPVFPVDITRSIENALIKARTAALQQQQRNQPQDSLARGRNSATPPSWTHTLTPSQ
GASHRYPPASSQAGHGSMNGHSQGNGSESHTPQQGQNVDLAALHRDIENLIGTARAEFAA
NPFDVSIQQRLKALLDLQAILQRQQLPPDQLKLVRDQVSALAPPKPAATQPFSHPNVPIP
NISTPSTQPIPRATPQPNLAALLNPNTLASLIQATANRQQSTPTPAIGGIVPQIQPSTTP
QPAATPVAENPLIASLRARGLLPPVPSTGTPPTGASFSLPFLVPGQTPAASVSTPQSTTD
ITINVHMSTASIKIPRPVLINSLYDAKNNRCGTCGRRFISTEEGKQQKARHLDWHFRTNQ
RMTDSIKRGQNRSWYVDERDWIKSREFDDDSGVAGTGGTGTTTAEEEAAKKQPQKQWIRA
PNDVTLRNAPCPICQEKFESTWSEDVQDWIWQDALKVGNRVYHASCYAEVTKDGSATSAA
ARAGTPSGRTGTPDSVLGKRKAEDTDSPGSKVRIKTEPA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgggactcccttccgacgaagtcgccgaggattacaagaactcgttggaagac
ttgacgacaaatgacaagttccagatcagcaatttgaccgtcatagctaaggagaataca
gaacatgccatggcgatatcacgagttctggagaatcatattcgaacaacaccgccatct
caaaaactacctgctctgtacgtagtcgacagtgttgtgaagaatgtaggaacaccctac
actctcttcttgggccggaacctttatcagacttttatgaatgcatacaccttggtcgac
cagcaaacgcggaggaaattggacgagatgctcaagacttggaaggagcctgttcctggc
tctttagaccctcgacctgtgttcccggttgatattactcggagcatcgagaacgcgctg
ataaaggccagaactgctgcacttcaacagcagcaacgaaatcaaccacaagattcgctt
gctcggggtcgaaattctgcaacgccgccgtcatggacgcatactctcacaccttcacag
ggtgcatcacatcgatacccaccagccagttctcaagcaggtcatggcagcatgaatgga
cattctcaaggaaatggatcggagtcacatactcctcaacaaggtcaaaatgtagatctt
gcggcattacaccgtgacatagaaaacctgattggcactgcacgagcagagtttgctgca
aacccatttgatgtatcgatacaacaacgcctgaaggcgttattagatctccaagcaatc
ctgcaacgccagcaacttcctccggaccaactgaaactggtcagagatcaagtctcggct
ctagccccgccaaaacccgcagcaacccagccattttctcatccaaatgtacctatcccg
aatatatcaacgccgtcgactcagccaatcccacgagcaacacctcagcccaatctggct
gccttgctaaacccaaacacacttgctagtttaattcaagcaacggcaaaccgccagcaa
tccactcccacgccagccattggcggtattgttccccagattcagccatccaccactccc
caaccagcagcaaccccagtagcggagaatcctctcattgcatcacttagagcacgaggc
cttcttcctcccgtaccttctacaggaacgcctccaacgggggcttcatttagcctccct
tttctcgttcccggacagactcccgcggcttcggtttctacaccgcaaagcacgaccgat
atcacgatcaatgttcatatgagcacagcttctataaaaattcctcgtcccgtgttgata
aacagtctttacgacgcaaaaaacaatcgttgtggtacctgtggacgacggtttatatct
acagaagaaggcaagcagcaaaaggctcgccatttagattggcattttagaaccaatcaa
cgtatgacggactctataaaacgtggccagaatcgtagttggtatgtcgatgaaagggac
tggattaaatctcgagagtttgacgacgacagcggcgtagcaggcaccggcggtactggc
accactaccgctgaggaagaagctgcaaagaagcagccacaaaagcaatggattcgcgcg
ccaaatgatgtaacattacgcaatgcaccatgtccaatctgccaggaaaagttcgagtcg
acatggtcagaagatgtgcaagactggatatggcaggacgcactcaaagtagggaaccgt
gtttatcatgctagttgttatgcggaagttaccaaggatggttctgctacttctgctgct
gctcgtgcggggactccctcaggacgtacaggtacaccggactcggtgctggggaagaga
aaggccgaggataccgattcacctggttcaaaagtccgaatcaagacagagcctgcatga
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