Talaromyces marneffei: EYB26_009114
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Entry
EYB26_009114 CDS
T06392
Name
(RefSeq) uncharacterized protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tmf
Talaromyces marneffei
Pathway
tmf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EYB26_009114
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmf03019
]
EYB26_009114
03036 Chromosome and associated proteins [BR:
tmf03036
]
EYB26_009114
Enzymes [BR:
tmf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EYB26_009114
Messenger RNA biogenesis [BR:
tmf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
EYB26_009114
mRNA degradation factors
5'-3' decay
Decapping complex
EYB26_009114
Chromosome and associated proteins [BR:
tmf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
EYB26_009114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
79169087
NCBI-ProteinID:
XP_054124340
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All DBs
Position
7:complement(join(1274419..1275207,1275258..1275854,1275908..1275974,1276034..1276077))
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AA seq
498 aa
AA seq
DB search
MVDAVTSQLNNTKLGETDGSWKDKLKIPAKDNRTQTEDVTATKGLEFEDFYIKRELMMGI
FEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFIIPTLERINPKSTKTQALILV
PTRELALQTSQVCKTLGKHLGINVMVTTGGTGLMDDIIRLNDTVHIIVGTPGRVLDLASK
GVADLSECPTFVMDEADKLLSPEFTPVIEQLLSFHPKDRQVMLFSATFPMIVKSFKDKHM
RNPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAK
KITELGYSCFYSHARMLQHNRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFP
KNAETYLHRIGRSGRFGHLGLAINLINWDDRFNLYKIEQELGTEIQPIPQSIDKKLYVYD
SPDTIPRPIASAPQPDETQQREQQGYRQGNHHPGGRYNNNAGRGRGGYRGRGGQGQRRGG
YQNPHGHDGGKPQPTPAS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggttgacgccgttacatcacaacttaacaataccaaactaggggaaacggacggatca
tggaaagacaagttgaagatccccgcaaaggacaaccgaacacagactgaggatgttacc
gcgacgaaaggccttgaatttgaagatttttatatcaagcgggagttgatgatggggatt
ttcgaggctggctttgagaagccatctcccattcaggaagagacgatacctgtggcgttg
acgggtcgcgatatccttgcgcgagcaaagaacggtactggaaagacggcagcattcatc
atccctactctcgaacgcataaacccaaagagcacaaagacacaagctctcattctcgtc
cccactcgagaactcgccctccaaacttcacaggtttgcaagactctaggtaaacatctt
ggcatcaacgttatggtcactactggtggtactgggttaatggacgatatcattcgtttg
aacgataccgtgcacatcatcgttggaacacctggtcgtgttcttgatttggcaagcaaa
ggtgtcgctgacttgtcggaatgccctacctttgttatggatgaagccgataagcttctt
tcccccgaatttacgccagtcattgaacagctcctttcgtttcaccccaaggatcgccag
gtcatgctgttcagtgccacgttccctatgattgtcaagtctttcaaggacaagcacatg
cgtaacccttatgaaatcaacctgatggacgaacttaccctccgtggtattacgcaatac
tatgcctttgttgaagaaaagcaaaaggtccactgtctcaacacacttttctcgaaactc
caaatcaaccagtccatcatcttctgcaactccacaaaccgtgtagagttgttggccaag
aagatcaccgaactcggatattcttgtttctactcccatgcacgaatgcttcagcacaac
cgaaaccgtgttttccatgacttccgtaacggagtttgccgtaacctggtgtgctccgac
ttgttgactcgtggtatcgatattcaggcagtcaatgttgtgatcaactttgatttcccc
aagaacgccgagacttatctccatcgtattggtcgttctggacgttttggacatttgggt
ttggcaatcaacttgatcaactgggatgatcgattcaacctttacaagatcgagcaggag
ctaggcactgaaattcagccgatccctcaatctattgacaagaagctttacgtctacgac
tcaccggataccattcctcgccctatcgcttctgcacctcagcctgacgagactcaacag
cgtgagcagcaaggataccgccagggcaaccatcaccccggtggccgctacaataacaac
gcaggtcgtggacgaggaggttaccggggccggggcggccaaggtcagcgccgaggtgga
tatcagaatcctcacggtcatgacggcggcaaaccgcaaccaacccctgcttcttaa
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