Candidate division TM6 bacterium GW2011_GWF2_28_16: US01_C0001G0200
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Entry
US01_C0001G0200 CDS
T04457
Name
(GenBank) DNA-directed RNA polymerase subunit beta', DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tmg
Candidate division TM6 bacterium GW2011_GWF2_28_16
Pathway
tmg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tmg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
US01_C0001G0200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tmg03021
]
US01_C0001G0200
03400 DNA repair and recombination proteins [BR:
tmg03400
]
US01_C0001G0200
Enzymes [BR:
tmg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
US01_C0001G0200
Transcription machinery [BR:
tmg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
US01_C0001G0200
DNA repair and recombination proteins [BR:
tmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
US01_C0001G0200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AKM81159
UniProt:
A0A0G4AZT0
LinkDB
All DBs
Position
223220..226909
Genome browser
AA seq
1229 aa
AA seq
DB search
MKNIVDFSALQIKIASPDDIMSWSHGEVKKPETINYRSLKPEKDGLFDEKIFGPSKDYEC
YCGKYKRIRYKGIICDKCGVEVTEAKVRRERMAHIKLASPVAHIWFFKGAPSKLSLLLDI
SPRNLNSIMYFSQYVVLAVDDEEKKAVLERLDIDQVAAADQLRDNAEKAILTLKETLDQE
KTSLSERVKSKEAMQLKITELELKAKNKIIATKQQLEVQLEQTEEIFKTIKQMVKKIKIK
TVLTEDEYLKLDEYDAASHLEVGMGAESILALAKKVDLDAEVKILRDELAESKGAKKAKV
TKRLRVVEGFKKSSIDPAWLFLTVLPVLPPDLRPMVQLSGGRFAASDLNDLYRRVINRNN
RLAHLINLGAPEIILRNEKRMLQEAVDSLIDSSQTKQTRRRSNRRPLRSLSEMLRGKTGR
FRQNLLGKRVDYSGRSVIVVGPELKLNQCGLPKDMALEIFKPYVLRELILKGIAPNVKSA
RHLVDRRESSVYAILEQVIENHPVLLNRAPTLHKLGIQAFFPVLIEGGAISLHPCVCSGY
NADFDGDQMAVHVPLTKQAQQEAIDLMMANHNLLKPANGEPITVPNKEMALGAYYYTSFD
EKFELFPSILGSKNEAYHLHQIGKLDLRQKVKVFMKIKGKKQIVETNIGRLLFNSVLPES
LRFINEPVNAKMIKQIVTKAIEIEDNEVVAKMIDDIKDLGFEAATVSGLSVSVSDCEMLA
EKDQVVDAANQKAELIRDNYLQGLITDEERRRQSLDVWIKTTDELAEKTWKTYADDNSVK
VIIDSGGTRASKDQVKQLGAMRGLVVDPLGNIVEMPTKSNFRQGLSIFEYVTSARGSRKG
LTDSAIKTADAGYLTRRLVDVSHDAIIRQEDCGTTEGIELVRAPRNDVFYYRILGRYTSK
DIKIGKRTVVTAGELINDDMAKEIAASDLESVWVRSPITCHCNKGLCSKCYGWDFATRTD
VEIGVPVGVIAAQSVGEPGTQLTMRVKHSGGIVGLDVTQGLPRVEELLEARNPKVQALIA
HIVGKVKIEEKDGENIITIKNKEGEEETFTLPASVALLVKDKDLVFAGQKLTSGGVNIQE
LLQLKGLIFTQQHIIDQVQEVYESQGVTINDKHFEVITRKMGDKLQIELSGDTDLLVGEV
VERARFVEVNDNVMAAGGDPATARVLLLGITRSSLFTSSWLSAASFQHTKHVLTDAASEG
AIDYLEGLKENVIIGRLIPTSEERARATV
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacattgtcgacttctcagccctacaaattaaaatagcttctccagatgacatc
atgagctggtctcatggtgaagtcaaaaaaccagaaactattaactatcgttctcttaag
ccagaaaaagatggtctttttgatgaaaaaatctttggaccaagtaaagactacgaatgt
tattgtggaaaatataagcgcattcgttataaaggtattatctgtgacaaatgtggtgtg
gaagttactgaagctaaagttcgtcgtgaacgcatggctcacatcaagttagcttctcca
gttgctcatatctggtttttcaagggagctccttctaaattgtctttacttttggatatt
tctccaagaaatcttaactccatcatgtacttctctcagtatgtagttcttgcagttgat
gatgaagaaaagaaagcagttctagagagattagatattgatcaagttgctgcagctgac
cagttacgtgacaatgctgaaaaagccattcttactcttaaagagaccttagatcaagag
aaaacttccctaagcgaaagagttaagagtaaagaagctatgcagcttaaaattactgaa
ctcgagcttaaggctaaaaacaaaattattgctaccaaacaacaattagaagttcaactt
gagcaaacagaagaaattttcaagaccattaaacaaatggttaaaaaaatcaaaatcaaa
actgttttaactgaagatgaatatctcaagttagatgaatacgatgctgcttctcattta
gaagttggtatgggtgcagaaagtattttggctttggctaaaaaagttgatttagacgct
gaagttaaaattttaagagatgaattagctgaaagcaaaggtgctaaaaaagccaaagtt
accaagagactgcgcgtagttgaaggtttcaaaaagtctagtattgacccagcttggttg
ttcttaacagttttaccagttttacctccagacttgcgtcctatggtgcaattatctggt
ggtcgttttgcagcttcagatcttaatgatctctatcgtcgtgtcattaaccgtaataat
cgtttggctcacttaattaatttaggtgccccagaaatcattttacgtaacgagaaaaga
atgctccaagaagctgttgattctttaatcgatagttctcaaaccaagcaaactcgtcgt
cgtagtaatcgtcgtccactgcgttctctttctgagatgttacgtggtaagactggtcgt
ttccgtcaaaacttacttggtaaacgtgtcgactattcaggtcgtagtgttatcgtggtc
ggtccagaactaaaactcaaccaatgtggtttaccaaaagacatggctttggaaattttc
aaaccttatgttttgagagaattaattctcaaaggcattgctccaaacgttaagagtgct
cgtcatttagttgatcgtcgtgaatctagtgtttacgcaattcttgagcaggttatcgag
aaccacccggttcttttaaaccgtgctcctactttgcataaattaggtattcaagctttc
ttcccagttttgattgaaggtggggctatttcgcttcatccttgtgtttgttctggctat
aatgctgattttgatggtgatcaaatggctgttcacgtacctttgaccaaacaagctcaa
caagaagcgatcgatttaatgatggctaaccacaatttgctcaagccagctaatggtgaa
cctattactgtgccaaataaagaaatggctcttggtgcttattactacactagttttgat
gaaaagtttgagcttttcccatctattttgggtagtaagaatgaggcttatcatttacat
cagattggcaaacttgatcttcgtcaaaaagttaaagtttttatgaagattaaaggtaaa
aaacaaattgttgaaaccaatattggtcgcttgcttttcaatagtgttttacctgagagt
ttgcgttttatcaatgaaccagttaatgccaaaatgattaaacaaattgtcactaaagct
attgaaatcgaagataacgaagtggtagccaaaatgattgatgacattaaagatttaggt
tttgaagcagctactgtctctggtttatctgtttcagtcagcgattgtgaaatgcttgct
gagaaagatcaggttgtcgatgccgctaatcaaaaagctgaattaattcgtgataattat
ttacaaggtttgattactgatgaagaacgtcgtcgtcaatctcttgatgtttggattaaa
accaccgatgaattagccgaaaaaacttggaaaacctatgccgatgacaactcagtcaaa
gtaattattgattcaggtggtactcgtgcttccaaagatcaggtgaagcagttaggtgcc
atgcgcggattagtggttgatccacttggaaacattgtggaaatgcctactaaatctaac
tttagacagggtttatctatctttgaatatgtgacttcagctcgtggttctcgtaaaggt
ttgactgactcagctattaaaactgctgatgctggttatttaacccgtcgtttagtggat
gtctctcatgatgctattattcgtcaagaagattgtggaactacagagggaatagagcta
gtaagagcacctagaaatgatgttttctattacagaattcttggtcgctatactagtaaa
gatattaaaattggcaaaagaaccgtagtcactgctggtgaattaatcaatgatgatatg
gctaaagagattgccgcctcagacttagaatcagtttgggtgcgctctccaattacctgt
cattgtaacaaaggtctttgtagcaaatgttatggttgggattttgccaccagaacagac
gtagaaattggtgtaccagttggtgtcattgctgctcagtcagtaggtgaaccaggtact
cagcttacaatgcgtgttaaacattcaggtggtatcgtcggtttagacgtgacccaaggt
ttgcctcgtgtggaagaattacttgaagcacgtaatccaaaagttcaagctttgattgct
catattgttggtaaagttaaaattgaagaaaaagatggtgaaaatattatcaccattaaa
aataaagaaggtgaagaagaaacctttactctcccagcttcagttgctttgctagttaaa
gataaagatttggtttttgcaggtcaaaaattaactagtggtggtgtgaacattcaagag
cttttacaacttaagggtctaatcttcacacagcaacacatcattgaccaagttcaagag
gtttatgaatctcagggtgtaactattaatgataagcattttgaagttatcactcgtaaa
atgggtgacaaactccaaattgaactttctggagacactgatctcttagttggtgaagta
gtcgagcgtgctcgcttcgtagaagtgaatgataatgttatggcagccggtggtgatcca
gctactgcaagagttttgcttttgggtattaccagatcatctctctttaccagttcttgg
ttgtctgctgcttctttccaacacaccaagcatgttttgaccgatgctgcttctgagggc
gcgatcgattacctggaaggtttgaaagaaaatgttattattggtcgtttaatcccaact
agtgaggaaagggccagagcaacagtatag
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