Candidate division TM6 bacterium GW2011_GWF2_28_16: US01_C0001G0297
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Entry
US01_C0001G0297 CDS
T04457
Name
(GenBank) phosphodiesterase, uncharacterized protein
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
tmg
Candidate division TM6 bacterium GW2011_GWF2_28_16
Pathway
tmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
US01_C0001G0297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmg03019
]
US01_C0001G0297
Messenger RNA biogenesis [BR:
tmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
US01_C0001G0297
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HrpB2
DivIVA
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AKM81251
UniProt:
A0A0G4AZW9
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Position
297694..299301
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AA seq
535 aa
AA seq
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MSFFSNLSTLFSAEDEAKRKAKISFPRAQQPQAKPVKQFNKPVKQAKPTPVMQAEASSII
EKAKQEAESLIRDAHSKAREIIVEAKDESLEIRSKIEKETRRVEQELANQQRELQNKLDK
IDFRFEQTAQKEERIDQLKKELEDQRVTLEKSKAKTLEKLEEISGYSKDKAKEILFEGLE
KKYSRDLAKMVAEKEEAAKLDADEKAQEIIIDAMRHGATDYVAEYTVSVINIPSEEIKGK
IIGRNGRNIHSFESCTGVDVDLDSSPTEIKLSSFDPVRREIARVSMERLIKDGRIQPARI
EEIVAKVEQEIDRITFDAGKKLAHEVGAYNIPNGLISMLGRFKYRFSYGQNMIKHTIEET
KMGINIANELKLDINVVRLGCLLHDIGKVSGNHDESHVQAGVRIAKQFGMPQAVIDCIAQ
HHEDEPFSSPESMATYIADAISGARPGARYENHEDYVKRLSDLETIAMSYEEVKQAYAIQ
AGRELRVLLLPEKSKDDDVTILANKIRDRVQKEVMVPGSVTVTVIREFREQAITK
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttttagtaatttatcaacgctgttttcagctgaggatgaggccaagcgaaaa
gctaaaatttcttttccaagagctcaacagccacaagctaagccagttaaacaatttaat
aagccagtaaaacaggctaagccaactccggttatgcaagctgaggcttcttctattata
gaaaaagccaagcaggaggcagaatctttaattcgcgatgctcactctaaagctagagaa
atcattgttgaagcaaaagatgagtctttagaaattcgttccaaaattgaaaaagaaact
cgtcgtgttgagcaagaattagctaaccaacaaagagagttacaaaataagttagataag
attgattttcgttttgagcaaaccgctcaaaaggaagaacgcatagatcaacttaaaaaa
gagttggaagatcaaagagtaactttagaaaaatctaaggctaaaaccttggaaaaatta
gaagaaatttctggctattctaaagataaggccaaagaaattttatttgaaggtcttgag
aaaaaatacagccgtgatttagcaaaaatggtggcagaaaaagaagaagccgccaagcta
gatgctgatgagaaagctcaagaaatcataatcgatgccatgcgtcatggtgctactgat
tatgttgctgaatatactgtttcagttattaatattccttcagaggaaattaaaggtaaa
attattggtagaaacggtcgtaatattcactcttttgaaagttgcactggtgtagatgtt
gatcttgattcctcacctacagagatcaaactttcaagtttcgatccagttcgtcgcgaa
attgctcgtgtttctatggaacgcttaatcaaagatggtcgtatccagccagctagaatt
gaagaaattgttgccaaagttgaacaagaaattgacagaattacctttgatgctggtaaa
aaattagctcatgaagttggtgcttataatattcctaacggcttaatttctatgctgggt
cgttttaaatatcgtttttcttacggtcagaatatgattaaacacaccatcgaagaaacc
aagatgggtattaatattgctaatgaattgaaattagatattaatgtagttagacttggt
tgtttattacatgatataggtaaggtttcaggcaatcatgatgagagtcatgtccaagct
ggtgtgcgcattgccaaacaatttggtatgcctcaagctgttatagattgtattgctcaa
catcacgaagatgaacctttttctagcccagaatccatggctacttatatagctgatgct
atttctggtgccagacctggcgcacgttatgagaatcacgaggattacgtcaaaagatta
tccgatttagaaacgattgctatgtcttatgaagaagttaaacaggcttatgctatccaa
gctggtcgtgaactcagagtgcttttgttgccggagaagagcaaagatgatgacgtgaca
attttagccaataaaattcgcgatcgcgtgcaaaaagaagtcatggttccgggtagtgtc
acagttaccgttatccgtgaatttcgtgagcaagcaatcactaaataa
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