Candidate division TM6 bacterium GW2011_GWF2_28_16: US01_C0001G0347
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Entry
US01_C0001G0347 CDS
T04457
Name
(GenBank) putative DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tmg
Candidate division TM6 bacterium GW2011_GWF2_28_16
Pathway
tmg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
US01_C0001G0347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmg03019
]
US01_C0001G0347
Enzymes [BR:
tmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
US01_C0001G0347
Messenger RNA biogenesis [BR:
tmg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
US01_C0001G0347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_19
AAA_30
Cas3-like_C_2
ACT_5
ERCC3_RAD25_C
HEM4
Motif
Other DBs
NCBI-ProteinID:
AKM81300
UniProt:
A0A0G4B167
LinkDB
All DBs
Position
complement(336220..337476)
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AA seq
418 aa
AA seq
DB search
MYHNSRSSSNFGGNRNSSSNFQNRGSGFGGRRSFGGNSGGNRSRGRKISSFDPSMFIQKA
SLQNEEMETVEKYQNKNAFADFAVDQQIKINLAHKGYQNPTPIQDQIIPHILEGRDVVGI
ANTGTGKTAAFLIPLIDKVLRNPATRVLVVTPTRELALQIRDELVSFSQNLPILSTLCIG
GSSISRQVERLQKRPAFVIGTPGRLKDLDQRHKLHFAHFDTIVLDEVDRMLDMGFIHDVK
AITSQLPEERQSLFFSATTNKKVEDIMQGFLRNPAFVTVESKESRAHIEQDVVRVGGKVK
IEVLHDLLIKEEFQKVLVFGRTKHGMERLSRELDQRGFRVASIHGNKTQGQRQKALQQFR
DDRVQILLATDVVSRGLDIRDVTHVINYDLPECYEDYIHRIGRTGRADKTGIALTFVD
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtatcataatagtcgctctagttctaattttggtggaaatagaaacagtagctccaat
tttcaaaataggggttctggttttggtggtcgtcgtagtttcggtggtaatagtggtgga
aatagaagtagaggcagaaaaatctctagttttgatccttccatgtttatccaaaaagct
agccttcagaatgaagaaatggaaactgttgaaaaatatcagaacaagaatgcttttgct
gactttgcagttgaccaacaaattaaaattaacttagctcataagggttatcaaaatcca
actccaattcaagatcaaattattcctcatatcttagaaggtagagacgtggttggcatt
gctaacaccggcacaggtaaaactgcagcctttttaattcctttaattgataaagttttg
agaaacccagctactagagttttagtcgtcactcctactcgtgaattagctttacaaatc
agagatgaattagtatcttttagtcaaaatttaccaattctttctactctttgtatcggt
ggttcttcaatttctagacaagttgaacgcttacaaaaaagaccagctttcgtcattgga
actccaggtcgtcttaaagatttagatcaaagacacaaattacattttgcccattttgat
actatcgttttagacgaagtcgacagaatgttggatatgggctttattcatgatgttaag
gccattactagtcagttgcctgaagaaagacagtctttgtttttctcagctaccactaat
aagaaggttgaagacattatgcaaggtttcttaagaaatcctgcttttgtgactgttgaa
tctaaagaaagtagagctcacatcgaacaagatgttgtcagagtgggcggaaaagtcaaa
attgaagttttacatgatttgttaattaaagaagaattccagaaagtcttagttttcggt
cgtaccaaacatggtatggagagattaagccgagaattagaccaaagaggcttcagagtt
gcttcaattcatggtaataaaactcagggtcaaagacaaaaagccctacaacaattccgc
gatgatcgtgtgcaaatccttttagcaactgatgttgtttcaagaggtttggacattaga
gacgtcactcacgtgattaattacgacttaccagaatgctacgaggattatatccaccgc
atcggtcgtactggtcgtgctgataaaactggaattgctttaacttttgttgattaa
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