Candidate division TM6 bacterium GW2011_GWF2_28_16: US01_C0001G0699
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Entry
US01_C0001G0699 CDS
T04457
Name
(GenBank) excinuclease ABC subunit A, excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
tmg
Candidate division TM6 bacterium GW2011_GWF2_28_16
Pathway
tmg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
US01_C0001G0699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmg03400
]
US01_C0001G0699
DNA repair and recombination proteins [BR:
tmg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
US01_C0001G0699
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
US01_C0001G0699
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
RsgA_GTPase
AAA_16
nSTAND3
DnaJ_CXXCXGXG
nSTAND1
ATPase_2
AAA_22
AAA_33
APS_kinase
AAA_14
AAA_18
AAA_15
NTPase_1
cobW
Viral_helicase1
FAM220
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AKM81628
LinkDB
All DBs
Position
659274..662228
Genome browser
AA seq
984 aa
AA seq
DB search
MALRNTIKITGAREHNLKNINLEFEKNQLIVFTGLSGSGKSSLAFDTLYAEGQRRYVESL
SSYARQFLGVMNKPDVDQIDGLSPAISIDQKTTSHNPRSTVGTITEIYDYCRLLFARVGH
PHCHNCGKEISTQSIDQIITQIFNQIEEKFAKAKNTPQKIMILSPVIKERKGEFDKLLQN
LIKKGYNKARIDGQIYNLDQELNLIKTNKHSIDALIDRLVISKVQLNDKKESTILKSRLN
QSIEEALKLAGGLVIVSWVNDSSFTFPENPQDTKDFLFSENLACSDCGISLKELEPRSFS
FNSPEGACPKCNGLGSILKINPDRIIAPSLTMSEGAVIPFARMMGNEGWFARLVRIVLED
FSADFRMTKWEDMSKELQDILLYGSEKIYDVVGENRFGNMTSYQSKFEGFIKNLERRYTE
TDSEFIRREINQFMHKEVCPDCKGARLKEEVLSVTIDEINISQFSQLTIDRSLKWIEKVS
NPKEKILSAKELQIATSILKEIKTRLHFLSAVGLNYLTISREAASLAGGEAQRIRLASQI
GTGLTGVLYILDEPTIGLHQRDNRRLIETLQELKNKGNTIVVVEHDRDIMMAADHIIDFG
PKAGSEGGEIVFDGSYEEILKAKDSLTGKYLSRKKEIKREKTANKKDVHKKAKIAIHGAK
YNNLKNIDVEIPLNALTCITGISGSGKSTLLHNVLHNHLAKNLGYTYSGKLAEVEKISIP
PQVKRLSMIDQSPIGKTPRSNPATYTKAFDYIRQIFARTKDAAMRGYKIGRFSFNVKGGR
CEACQGEGQIKIEMQFLPDVYVECDVCHGQRYNEETLQVLYQDKNIAQVLDLSIDEAFDF
FKNHSNIRQRMQTLKEVGLGYLKLGQPAPTLSGGEAQRVKLAKELSTRSHDHLIYLLDEP
TTGLHFADIQKLLNVLHQLVEQDNTVILIEHNLDVIKNADWLIDLGPEGGEYGGEVVAFG
TPAEVAENEKSFTGHYLKEELSRN
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atggctttgagaaatactattaagattaccggagctcgtgagcataatctcaaaaatatt
aacttggaatttgaaaaaaatcagttaattgtttttactggtctttcaggtagtggtaaa
agctctttggcttttgataccctgtacgctgaaggtcaacgtcgttacgttgaatcactc
agctcttatgctcgtcaatttttgggcgtaatgaataagccagatgttgaccaaattgat
ggtttgtctccagcaatttcaattgaccaaaaaaccacctctcacaatcctcgctcaacc
gttggtaccattactgaaatttatgattattgtcgtttactttttgctagagtagggcat
cctcattgccataactgtggtaaagaaattagcactcagagtattgatcaaatcattact
caaatttttaatcagattgaagaaaaatttgcgaaagcaaaaaacactccgcaaaaaatt
atgattttgtcgccagtcattaaagagagaaaaggcgaatttgataagttgctccaaaac
ctaattaaaaaaggctataacaaggctagaattgatgggcaaatttataacttagatcaa
gaattaaaccttattaaaactaataaacacagcattgatgccttgattgatcgcttggta
atcagtaaggttcagttaaatgacaaaaaagaatcaactatcttaaaaagtagactcaat
caatcaattgaagaagctcttaaacttgctggaggcttagttattgttagctgggttaac
gattctagctttacttttccagagaatcctcaggatactaaagattttctttttagtgaa
aatctcgcttgtagtgattgtggtatttctcttaaagagctggagccacgttctttctct
tttaattcgcctgaaggagcctgtccgaaatgtaatggtctaggctcgattttaaaaatt
aatcctgacagaattattgctccaagtttaaccatgagcgaaggggcagttattcctttt
gcgcgcatgatgggcaacgaaggttggtttgctcgtttagtcagaattgttttggaagat
ttttctgccgattttcgtatgactaaatgggaagatatgtccaaagaattgcaagatatt
ttgctttacggtagcgagaaaatttatgatgtggttggcgagaaccgtttcggcaatatg
actagttatcaaagtaaatttgaaggttttattaaaaatctcgaacgtcgctacactgaa
actgatagtgaatttattcgtcgagaaattaatcagtttatgcataaggaagtttgccca
gattgtaagggtgctcgtctcaaagaagaagtgctttctgtcaccattgatgaaatcaat
atttctcaatttagccaactaactattgatcgcagtttgaaatggattgaaaaagtcagt
aatccaaaagaaaaaatcctatccgctaaagaactacagattgccacttcgattctcaaa
gagattaaaactcgtttgcactttctttctgctgttggtttaaactatctaactatttct
agagaagcagctagcttggctggtggtgaggctcaaagaattagactagcttcacagatt
ggcacaggcctcacaggcgttctctatattcttgatgaaccaactattggccttcatcaa
agagataatcgccgtttaatcgaaactctccaagaattaaaaaataaaggcaatactatt
gtcgtcgttgagcatgatcgcgacatcatgatggcggctgatcacattattgattttgga
cctaaggctggcagtgagggtggagaaatagtttttgatggtagctatgaagaaattttg
aaagccaaagattctctcactggcaaatatttatctagaaaaaaagaaattaaaagagaa
aaaactgctaataaaaaagatgttcataaaaaggctaaaattgctattcatggtgcaaaa
tataataacctaaaaaacatcgacgtagagataccactcaatgctcttacctgtatcact
ggtatttctggttctggcaaatctaccttattgcataatgtcttacataatcatttagca
aaaaatcttggctatacttattctggaaaattagcggaagtagaaaaaatttctattcca
ccacaagttaaaagactaagcatgattgaccaaagtccaattggtaaaactccaagatct
aatccggccacctacaccaaagctttcgattatattcgccagatttttgctcgcactaaa
gatgcggccatgcgtggctataaaataggtcgctttagttttaacgttaagggcggccgc
tgtgaagcttgccagggtgagggccaaatcaaaattgaaatgcagtttttaccagatgtt
tatgtagagtgtgatgtctgccatggtcaacgttacaacgaagaaactctgcaagtttta
tatcaagataaaaacattgctcaagtcttagatctcagcattgatgaagcttttgatttt
ttcaaaaatcacagcaacatccgtcagcgcatgcaaactcttaaagaagttggcttgggt
tatttgaaactgggtcaaccagctccaaccttaagtggtggtgaagcacaaagagttaaa
ttagccaaagagttaagtactaggtctcatgatcatttaatttatcttttagatgaacca
actactggactccattttgctgatattcaaaaactactcaacgtcttacatcaattagtt
gaacaagataacactgtgattttaattgaacataacttagacgtcattaaaaatgctgac
tggctaatcgatctcggaccagagggtggagaatacggtggcgaagtggttgcttttggc
actccagctgaagtggcagaaaacgagaaatcctttaccggtcattatttgaaagaagaa
ttaagcagaaattaa
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