Candidate division TM6 bacterium GW2011_GWF2_28_16: US01_C0001G0842
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Entry
US01_C0001G0842 CDS
T04457
Name
(GenBank) topoisomerase I, DNA topoisomerase I protein
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tmg
Candidate division TM6 bacterium GW2011_GWF2_28_16
Brite
KEGG Orthology (KO) [BR:
tmg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tmg03032
]
US01_C0001G0842
03400 DNA repair and recombination proteins [BR:
tmg03400
]
US01_C0001G0842
Enzymes [BR:
tmg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
US01_C0001G0842
DNA replication proteins [BR:
tmg03032
]
Prokaryotic type
DNA Topoisomerases
US01_C0001G0842
DNA repair and recombination proteins [BR:
tmg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
US01_C0001G0842
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Toprim_2
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AKM81765
UniProt:
A0A0G4B2K9
LinkDB
All DBs
Position
complement(787463..789655)
Genome browser
AA seq
730 aa
AA seq
DB search
MDLVIVESPTKARKLKDYLSNKYVIEASVGHVSDLPKKTLGIDLENNYQPVYEVSDGKKK
VVATLKRLAKTADKIYLATDPDREGEAIAWHIQNLLTNSKNKEQFFRSTFHEITKEAVNA
AIAKPGKLDLNLVDAQQARRILDRLVGYQVSPVLWKKIRRGLSAGRVQSVALRLIVEREK
EILAFKPDEFWELSVALAKADLLKEQKVFDEEGKPKEQLDKNIFVAALDKLNGKKASVSN
VAQAEAISKDLIDAAYSVIGVEKTQRNRQSLPPFTTSLLQQAAATSFGYSAKQTMSLAQR
LYEEGLITYHRTDSFNLATSAVDKAREYIVNSFGKDYLPAKARVFSKTSKNAQEAHEAIR
VTDLSIDKNNVISKAASLTEQHVKLYDLIWRRFLSSQMTPAIYDQTTILVEATAKENKNK
YLLRSSGSIVRFDGWRRLFTISEDQILPDLKANDPLSYLDLASLQKFTQAPPRYNDASLV
KELEKRGIGRPSTYASIISVIVDRAYVERTQKKFFATPIGITVCDFLVEHFDNFMDYDFT
ASMEEDLDLIALGEKNWVKIIDLFYKPLAKKIAEVTEEAVRVQVPVEKTGEQCPECKEGE
IVIRSGRFGKFKSCSRFPECKYTQNIVETLPDQHCPLCGEGDVIVKNTRWGKPFYGCSLY
PKCDFASWKKPEPDYKLTKEEWAEMKRKREEWKERMGKNKKPAETKPAKKVKAKAKTKVK
KKTAAKKKSA
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggatctagtcatcgttgagtcaccaactaaagcaagaaaactaaaagattatctcagt
aacaaatatgttattgaggcttctgtgggtcatgttagtgatttaccaaagaaaaccttg
ggcatcgatttggaaaataattatcaacctgtttatgaggtaagtgatggtaagaaaaaa
gttgttgccactctcaaaagattggccaaaactgctgataaaatttatttagctactgac
cctgaccgcgaaggagaggcaattgcttggcatattcaaaatttattaacgaattccaag
aacaaagaacaatttttccgttccacttttcatgaaattactaaagaagcagttaatgct
gctatcgcaaaaccaggcaagcttgatctcaatctagttgatgctcagcaagcacgccgc
attttagatcgtttagttggctatcaagtttcaccagtcttgtggaagaagatccgtaga
ggcttatctgctggtagagtgcaatctgtagccttacgcttaattgtggagagagaaaag
gagatccttgcttttaaaccagatgaattttgggaattatctgttgctttagccaaggca
gacttacttaaagaacaaaaagtatttgacgaagaaggcaagccaaaagaacagctagat
aaaaatatttttgtggcggctttagataaattaaatggtaaaaaagccagtgtaagcaat
gtcgctcaggcggaagctatttctaaagatctgattgatgctgcttattccgttattgga
gtagagaaaactcagcgtaatcgtcagagtttgccaccttttactacttcgctattgcag
caagccgctgctactagcttcggttattctgctaaacagaccatgagtttggcgcaaaga
ctttatgaagaaggtttgattacttatcatcgtaccgattcttttaatttagctacttcc
gctgttgataaggctcgtgaatatatagttaatagttttggcaaagattatctgccagca
aaagctagagtttttagtaaaacctccaaaaatgctcaagaagctcatgaggctatccgt
gtcactgatctcagtattgataaaaataatgtaattagcaaagctgcttcactgactgaa
cagcacgttaaactttatgatttaatttggagaagatttttgtcatctcagatgactccg
gcgatttatgatcagaccacaattttagttgaggctacagctaaggaaaataaaaataaa
tatttattgcgtagtagtggctcgattgttagatttgatggttggagaagattgtttact
atttccgaagatcaaattttgccagatctcaaagctaatgatccattatcttatttagat
ctcgcttctttgcaaaaattcacccaagctccacccagatacaatgatgcttctttggtc
aaagaattagaaaaaagaggtattggtcgtccaagtacttacgcttcgattatttcagtg
attgtcgatcgtgcttatgtagaaagaacgcagaaaaaattctttgctactcctataggc
attacagtttgtgattttttagtagagcattttgataatttcatggattatgattttacc
gcttctatggaagaggatttagatttaattgctcttggcgaaaaaaattgggtcaaaatt
attgatttattttacaagccactagccaaaaaaattgcagaagtcaccgaggaagcagtt
agagtgcaagttccagtcgaaaagacaggcgagcaatgtccagaatgcaaagaaggagaa
atcgttattcgcagtggccgctttggtaagtttaaaagttgcagtcgttttccagaatgt
aaatatactcaaaatattgttgaaactttgcctgatcaacattgtccactttgtggagag
ggtgatgtgatagtcaaaaataccagatggggaaaacctttttatggctgttctctttat
ccaaaatgtgattttgcttcttggaaaaagccagaaccagattacaagttgaccaaagaa
gaatgggcggaaatgaagagaaaaagagaagagtggaaagaaagaatgggtaaaaacaaa
aaaccagctgaaactaagccagctaaaaaagttaaagcaaaagctaaaactaaagtaaag
aaaaaaactgccgccaaaaagaaatcagcataa
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