Thiomicrospira microaerophila: JX580_00200
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Entry
JX580_00200 CDS
T08259
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh03420
Nucleotide excision repair
tmh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JX580_00200 (uvrD)
03430 Mismatch repair
JX580_00200 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tmh03400
]
JX580_00200 (uvrD)
Enzymes [BR:
tmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JX580_00200 (uvrD)
DNA repair and recombination proteins [BR:
tmh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JX580_00200 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
JX580_00200 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_11
Viral_helicase1
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UQB42373
LinkDB
All DBs
Position
34621..36816
Genome browser
AA seq
731 aa
AA seq
DB search
MDITFILNDLNDAQREAVTLEERHALILAGAGSGKTRVLVHRIAWLTEVVKLSPFNILAV
TFTNKAAREMRGRMEQLIGQQAQGVTMGTFHGIAYRLLRQHYEAAGLPQAFQILDSDDQK
RLVKRLLKALELDETQWPVKQVQAYINGEKEEGRRPHHIDAGHNPYVKKMLQIYQAYEQQ
CQKAGLVDFAELLLRAHELWLKRPEILSFYQNRYRHILVDEFQDTNSLQYAWLRVLAGGT
GKLFVVGDDDQSIYGWRGAKIENIRLFEQQFSDVKLVRLEQNYRSTSTILKAANQLIAFN
SERMGKELWSAGEAGEPISVYEAFNEFDEANYVITQLQRWVEQGGERKQVAILYRSNAQS
RVFEQALIQAEVPYRIYGGLRFYDRAEIKDVLAYLRLIVNRDDDASFERVFNLPTRGIGE
KTMQQVRDLARDLGLSLWQAAKTQLESGMTARAKGALAGFIELIDALDQACLGKPLQDQV
MLVIARSGLQTHFEKDKSEQGQSRLENLDELINAAAGFDKKPKSDTDNELEMANEDNPLL
AFLAQATLEAGENQADAWESAVQLMTLHAAKGLEFPLVFMVGLEEGLFPSQASNDDPYRL
EEERRLAYVGITRAERKLVMSYAQRRRLHGSEIYPAPSRFIKEVPADCVDWVRMGAQVQT
SRDWGNSAAKALQAEQNASGLPLGQRVFHQKFGEGTVVATEGSGDHMRIQVNFKHAGLKW
LVKSYANLELL
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggatattacgtttatattaaatgatttaaatgatgcccagcgtgaggcggtgacattg
gaagagcgccatgcgttaattttagccggggccggcagtggtaaaacacgggttctggtg
caccgaattgcttggttgaccgaagtcgtgaagctgtcgccgtttaatattttagccgtc
accttcactaataaggccgcgcgtgaaatgcgtgggcggatggagcagttgataggtcag
caggcgcagggcgtgacgatgggcacctttcatggcattgcgtatcgcttgttacgccag
cattacgaagcggccggtttgccgcaagcctttcagattttagattccgatgatcaaaaa
cgattggttaagcgcttgttaaaagcgctggagttggacgaaacccagtggccggttaaa
caggtgcaggcgtatattaacggtgaaaaagaagagggtcgccgcccgcatcatattgat
gcaggacataatccttatgtcaaaaaaatgctgcagatttatcaagcttatgagcagcaa
tgtcagaaagcaggcctggtggatttcgctgagttattgcttcgagcgcatgaactttgg
ctaaaacgcccggaaattctaagtttttatcaaaaccgttatcgccatattttggtcgat
gagtttcaggataccaatagcctgcagtatgcttggttgcgggtattggcgggcggaacc
ggcaagttgtttgtggtcggcgatgacgatcaatccatttatggctggcgcggcgcgaaa
atagaaaatatccgcttgtttgaacagcagtttagcgatgtgaaattggtgcgtttggag
caaaattatcgctcgaccagcacgattttaaaagccgccaaccaattgatagcgtttaac
tcggagcgaatgggtaaagagttatggagtgccggtgaagccggtgagccgatttcagtg
tatgaggcgtttaatgagtttgatgaagccaattatgtgattacccaattgcaacgctgg
gttgagcagggtggcgagcgcaagcaggttgcgattttgtatcgttcaaatgcccaatcg
cgggtgtttgagcaggcgttgattcaagctgaggtgccctatcggatttatggcgggttg
cgcttttatgatcgcgcggagattaaagatgtgttggcttatttgcgcttaatcgttaat
cgtgacgatgatgcatcgtttgagcgggtgtttaatttaccgacgcgcggtattggcgaa
aaaaccatgcaacaggtgcgtgaccttgcgcgggatttgggcttgtctttgtggcaagcg
gcgaaaacccaattagaatccgggatgaccgcgcgggcaaaaggtgcgttggctgggttt
atcgagttaattgatgcgcttgaccaggcctgcttgggtaagcctttgcaagatcaggtg
atgctggtgattgcgcgttccggtttgcaaacccattttgaaaaagacaagtcagagcaa
ggccaatctcgcttagaaaacttggatgaacttattaacgcggcggcgggttttgataaa
aaaccgaaatccgataccgataatgaactggaaatggcgaacgaagataatccgctatta
gcgtttctagcccaggcgaccttagaggcaggtgaaaaccaagcggatgcatgggaatcc
gctgtgcagttgatgactttgcacgcggcgaagggtttggagtttccattagtgtttatg
gtggggctggaagaggggttgtttccttcgcaagcgtcgaatgatgacccttatcgctta
gaagaagaacgtcgtttggcctatgtcgggattacccgtgccgagcgtaagctggtgatg
agttatgcccagcgcaggcgcttgcatggttcagaaatctatccggcgccttcgcgtttt
atcaaagaagtgcctgcggattgtgtcgattgggtaagaatgggggcgcaggtgcaaacc
tcacgcgactggggaaatagcgccgcgaaagccttgcaagccgagcagaacgcatccggc
ctgccactcggtcagcgggttttccatcaaaaattcggtgagggtaccgtggtggcgacg
gaaggtagcggtgaccatatgcgtattcaggttaactttaagcatgcaggtttgaaatgg
ttggtgaagtcctacgccaatttggaattgctttaa
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