Thiomicrospira microaerophila: JX580_00985
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Entry
JX580_00985 CDS
T08259
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tmh
Thiomicrospira microaerophila
Pathway
tmh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JX580_00985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tmh03019
]
JX580_00985
03009 Ribosome biogenesis [BR:
tmh03009
]
JX580_00985
Enzymes [BR:
tmh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JX580_00985
Messenger RNA biogenesis [BR:
tmh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JX580_00985
Ribosome biogenesis [BR:
tmh03009
]
Prokaryotic type
rRNA helicases
JX580_00985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
AAA_30
Cas3-like_C_2
UvrA_inter
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
UQB42521
LinkDB
All DBs
Position
complement(195190..196980)
Genome browser
AA seq
596 aa
AA seq
DB search
MSETTVDVTFESFNLIPQVLKALQDVGYETPSPIQAQAIPPILEGRDILGMAQTGTGKTA
AFALPLLSRVDAKNTNPQILVLAPTRELAIQVAEAFQSFAHHIKGFHVLPIYGGQEYGGQ
IRALKRGAQVVVGTPGRVMDHMRKGTLNLDNLQALVLDEADEMLRMGFIDDVEWVLEQTP
QDRQIALFSATMPKEVHKIASKHLNNPVEVIIKQKTGTASTITQSYWLVSGLHKLDALTR
ILEATEFDGMIIFVRTKTATIELAEKLEARGYAAAALNGDIAQNHRERIVDQLKKGKIDI
LIATDVVARGLDVERITHVINYDIPYDTESYVHRIGRTGRAGREGNAILFVAPRERRLLQ
QIERATNKKIDMLELPSTQDINDQRVEKFKARITAALEEEGLEFYQQMIEDLQQASNVPA
LEIAAALAKLVQGDVPFFIEDKPVRQASFRDDDRGSRDFGRDRPARGRNDRFERGDRAER
APRRPRVDGPPESGMKRYRINVGFANGVKPGNIIGAIANEANIEGSSIRQLNIQDSFSLV
DLPADLSKAQLATLKKTWICGQPADLTEVREGASAGAGNPRPKLSRKPAGAPRAKR
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaccactgtagatgtgacatttgaaagttttaatttaattccccaagtttta
aaagccctgcaagacgtcggttatgaaaccccttcaccgattcaagctcaagccattcca
ccgattttagaaggtcgtgatattttaggtatggcacaaaccggtactggtaaaaccgcg
gcatttgctttgccattattgtcgcgtgtcgatgccaaaaacaccaacccacaaatttta
gttttagcgccaacccgtgaattggcgatccaagtcgcagaggctttccaaagctttgct
caccacattaaaggcttccatgtactccctatttacggtggtcaggagtatggtggtcag
attcgcgcgctaaaacgtggcgcacaggttgtggtcggtacaccgggccgcgtgatggat
catatgcgcaaaggtacgttgaacctcgacaacctgcaagccttagtgttggatgaagcc
gatgaaatgttacgcatgggctttattgatgacgttgagtgggtattggaacaaacacca
caagatcgtcaaattgcactcttctcagcgaccatgccaaaagaagtccataagattgcc
agcaaacatctaaacaatccggttgaagtaattatcaaacaaaaaaccggcactgcctca
accatcacccaatcttattggttagttagcggtttacataagctcgatgccttgacgcgt
attttagaagccaccgagtttgatggcatgattattttcgtacgtaccaaaaccgcgacc
attgagttggcggaaaaattggaagctcgcggttatgcagcggcggcattaaatggcgat
atcgcacaaaatcaccgcgaacgtatcgttgatcaactcaaaaaaggcaagatcgatatt
ttgatcgcgaccgacgtggtggcgcgtggtttggacgttgaacggattacccatgttatt
aactatgacattccgtatgatactgaaagctatgttcatcgtatcgggcgtactggccgt
gccggacgtgaaggtaatgcgattttatttgttgcgccacgtgagcgccgtttattacaa
caaattgaacgtgcaaccaataaaaaaatcgatatgctggaattgcctagcacgcaggac
atcaatgaccaacgtgttgagaaattcaaagcgcgtattaccgctgccttagaggaagaa
ggcttagagttctatcagcaaatgattgaagatctccagcaagcctcgaatgtgccggca
ttagaaatcgcggctgcactggccaaattagttcagggtgatgtgccgttctttatcgaa
gacaaaccggtacgtcaagcgagcttccgcgacgatgatcgtggctcacgtgattttggg
cgtgaccgtccggcgcgtggtcgtaatgatcgttttgaacgcggtgatcgtgcagagcgt
gcgccacgtcgtccacgtgtggatggtccacccgaatcaggtatgaagcgctaccgtatt
aatgtcggttttgctaatggtgttaagccaggcaatattattggcgcgattgcgaatgaa
gcgaatattgaaggttcatcgattcgccaattgaatattcaggacagcttcagtttggtg
gatttgcctgctgatttatccaaggcacaattagcgaccctaaagaaaacctggatttgt
ggacagcctgcggatttaaccgaagtgcgtgaaggggcttcagccggagcaggtaaccca
cgtccaaagttgagccgtaaaccagcaggagcgcctcgcgctaaaagatag
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