Thiomicrospira microaerophila: JX580_01565
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Entry
JX580_01565 CDS
T08259
Name
(GenBank) TRAM domain-containing protein
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
tmh
Thiomicrospira microaerophila
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tmh03009
]
JX580_01565
Enzymes [BR:
tmh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
JX580_01565
Ribosome biogenesis [BR:
tmh03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JX580_01565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Cons_hypoth95
Methyltransf_25
MTS
Methyltransf_15
PrmA
TRM5-TYW2_MTfase
FtsJ
PCMT
Methyltransf_11
DOT1
Ribosomal_L22
Motif
Other DBs
NCBI-ProteinID:
UQB42609
LinkDB
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Position
complement(329021..330268)
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AA seq
415 aa
AA seq
DB search
MKLPQRRPATKKLSRIQLKGQIKDISVTGLTHHGQGVAKINGKTLFIENALPGEQVDIKI
IEDQPQYSLAKVTHWHHYAEDRTQPFCQYYGECGGCDLQHLAYPSQLHWKQQNFINQLES
QLDTRKLEVLPMLADEDRHYRRRARLFLTKDSKTKQPLLGFRKARSNQVIDIEQCPILTP
ELNQAFSKARFNLLPLATRQTKELQLAKAENGVWLTMEGYYEQPASQQPYYTVNNLRLHF
DPNGFIQVNEAVNNLLVEQALSWLKLSKKDCLLDLFCGNGNFSIAASKQAGLVVGVEGAA
SALKHAQNNAQYNNCPNLEFFQADLFQDCQHQAWWNKKYNSIILDPGRMGAKLVCEHLSM
LAADQILYISCQSDTLIRDLKLLEQQNYRLVKCQLFDMFPHTQHFETMVLLHKKT
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaccacaacgtcgcccagcaacgaaaaaactatccaggattcaacttaaaggg
cagattaaagatatatcagtcactgggctcacccaccatggccaaggtgttgcgaaaata
aacggtaaaactctatttatcgaaaacgccctgcccggcgaacaggtcgatattaaaatt
atcgaagatcagccacagtattctttagccaaggtaacacactggcatcattatgcagaa
gaccggactcaacctttttgccagtattatggcgaatgtggtggctgtgaccttcaacac
cttgcctatccaagccaactccactggaagcaacagaactttattaaccagttggaatct
caactcgatacccgaaaacttgaagttttaccgatgctggctgacgaggatcgccattat
cgtcgccgtgcaagattatttttaaccaaagacagcaaaacaaaacagcccttgctcggc
ttcagaaaggcgcgaagcaatcaagtgatcgatattgagcaatgcccaatactcactcct
gaactgaaccaagccttcagcaaagcacgatttaatcttctccctcttgctacaagacaa
accaaagaacttcaattggcaaaagcagaaaatggtgtttggctgactatggagggatat
tacgagcaaccagctagccagcagccttattacactgttaataacctcagacttcatttt
gatccaaacggatttattcaggtgaatgaggcggtcaataatctgctagtcgaacaggca
cttagttggctcaaactatcaaaaaaagactgtttgctagaccttttttgcggtaacggc
aattttagtatcgctgcctctaaacaagcaggcctggttgtgggcgtagaaggcgcagcc
tctgcacttaaacacgcgcaaaacaatgcacagtacaataattgccccaacctcgaattc
ttccaagccgacttatttcaagactgccagcaccaggcctggtggaacaaaaaatacaat
agcattatcctcgatccaggccgaatgggagccaaactagtttgtgaacacttgagcatg
cttgctgcagatcaaatactctatatttcatgccaaagcgacaccttaataagagactta
aaactactggaacaacaaaactatcgattagtaaaatgtcaactttttgatatgttcccg
cacacccagcattttgaaaccatggtacttctacacaagaaaacctag
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