Thiomicrospira microaerophila: JX580_02010
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Entry
JX580_02010 CDS
T08259
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tmh
Thiomicrospira microaerophila
Brite
KEGG Orthology (KO) [BR:
tmh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tmh03016
]
JX580_02010 (rnd)
Enzymes [BR:
tmh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JX580_02010 (rnd)
Transfer RNA biogenesis [BR:
tmh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JX580_02010 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
UQB42693
LinkDB
All DBs
Position
complement(424884..426029)
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AA seq
381 aa
AA seq
DB search
MNYTNLNTPAALTAFCEQQANQAWLAIDTEFIRQDTYYPILALVQICTQDGELALIDPLA
VTDLSPLWQLLADPNVCKVFHSARQDIEVLFQLGQQMPQNLFDTQTACVFLGYGDMAGFA
RVVEAEFQVTLNKALSRTNWLQRPLTHEQINYALDDVRYLAPLYQKLDSQLTHKQKQALA
TDFADMLNPALYVTDPNQAWLKVKGTKGMNSKQLGLVKQLAAWREQKAVGQNLPRKWVIS
DDAILQLAKRPARTIEGLYKLADLNAGSVRQYGEAIIKQLDLAFATPENWPEKPIKAPPP
TPQEDILLQLANSFALQVAQNQGIIASNLFQKADLLALIRQQTSPLDKGWRQLILGEPLK
KLLHNQACLGVIDQQLILSET
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaactataccaacctaaacaccccggcggcgctaaccgccttttgcgaacagcaagcc
aaccaggcctggctggcgattgacaccgaattcattcgtcaggatacctattacccgatt
ttggcgctggtacaaatttgcactcaagacggcgaactggcactgatcgacccgctcgcc
gtaaccgacctctccccgctctggcaactgctggccgacccaaacgtctgcaaagtcttt
cactctgcacgccaagacatcgaagtcctgtttcaacttggtcagcaaatgccacaaaac
ctgttcgacacccaaacagcctgtgtgtttttaggttatggcgatatggccggctttgcc
cgagtggtagaagcagaatttcaggtcacgctaaataaagccctaagccgaaccaactgg
ctacaacgtcccctcacacatgaacaaatcaactatgcgcttgatgacgttcgctaccta
gctccgctttatcaaaaactcgacagccagcttacccacaaacaaaaacaagcgctggcg
actgactttgccgatatgcttaacccggccctttatgttaccgaccccaaccaggcctgg
ttaaaagttaaaggcaccaaaggcatgaacagcaaacaactcggtctagttaaacaactg
gcggcctggcgtgaacaaaaggctgttgggcaaaacttgccacgtaagtgggtaatcagt
gatgacgcgattttacaactggctaaaagaccggcgcgcacaatagaaggcctatacaag
ctagcggatttaaatgcaggcagcgtcagacaatacggtgaagccattataaagcaactc
gatctagcctttgcaacgccggaaaactggccggaaaaaccgataaaagccccaccgccc
acaccacaagaagacatcctattacaactcgcaaacagttttgcgcttcaggtcgcacaa
aaccaaggtattatcgccagcaacctttttcaaaaagcggatctactggcattaattcgc
caacagacctcaccgcttgacaagggctggcgacaattaattctaggtgaaccgctcaaa
aaactactacacaaccaggcctgcttgggtgtaatagaccaacaactcattttgtctgaa
acgtaa
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